; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10020109 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10020109
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionreplication protein A 14 kDa subunit B-like
Genome locationChr04:28864255..28865632
RNA-Seq ExpressionHG10020109
SyntenyHG10020109
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK25262.1 replication protein A 14 kDa subunit B [Cucumis melo var. makuwa]2.4e-3994.38Show/hide
Query:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFS
        MDTSNPSVFVNAELLRLY+GRRVRAVIQV SEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF + S
Subjt:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFS

XP_022943091.1 replication protein A 14 kDa subunit B-like [Cucurbita moschata]2.4e-3984.69Show/hide
Query:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN
        MDTSNPSVFVNAELLRLY+GRRVRAVIQVQSEGNGVI+GKSTD+NQI VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD  +  +  +++N
Subjt:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN

XP_022983164.1 replication protein A 14 kDa subunit B-like [Cucurbita maxima]1.9e-3984.69Show/hide
Query:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN
        MDTSNPSVFVNAELLR+Y+GRRVRAVIQVQSEGNGVI+GKSTDDNQITVKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFD  +  +  +++N
Subjt:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN

XP_023528146.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]1.1e-3985.71Show/hide
Query:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN
        MDTSNPSVFVNAELLRLY+GRRVRAVIQVQSEGNGVI+GKSTDDNQITVKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFD  +  +  +++N
Subjt:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN

XP_038905423.1 replication protein A 14 kDa subunit B [Benincasa hispida]3.8e-4086.73Show/hide
Query:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN
        MDTSNPSVFVNAELLRLY+GRRVRAVIQV SEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD  +  +  +++N
Subjt:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN

TrEMBL top hitse value%identityAlignment
A0A1S3B7E2 replication protein A 14 kDa subunit B1.5e-3985.71Show/hide
Query:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN
        MDTSNPSVFVNAELLRLY+GRRVRAVIQV SEGNGVI GKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD  +  +  + +N
Subjt:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN

A0A5D3DP16 Replication protein A 14 kDa subunit B1.2e-3994.38Show/hide
Query:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFS
        MDTSNPSVFVNAELLRLY+GRRVRAVIQV SEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF + S
Subjt:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFS

A0A6J1FQS1 replication protein A 14 kDa subunit B-like1.2e-3984.69Show/hide
Query:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN
        MDTSNPSVFVNAELLRLY+GRRVRAVIQVQSEGNGVI+GKSTD+NQI VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD  +  +  +++N
Subjt:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN

A0A6J1J6J3 replication protein A 14 kDa subunit B-like9.1e-4084.69Show/hide
Query:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN
        MDTSNPSVFVNAELLR+Y+GRRVRAVIQVQSEGNGVI+GKSTDDNQITVKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFD  +  +  +++N
Subjt:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN

A0A6J1L034 replication protein A 14 kDa subunit B-like1.2e-3984.69Show/hide
Query:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN
        MDTSNPSVFVNAELLRLY+GRRVRAVIQVQSEGNGVI+GKSTD+NQI VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD  +  +  +++N
Subjt:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B1.0e-2761.22Show/hide
Query:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN
        MDTS+P+ FVN  LLR YIG++VRAVIQV     G + GKSTDD QI VKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD+ +  E  +++N
Subjt:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN

Q9LXK1 Replication protein A 14 kDa subunit A3.0e-2455.56Show/hide
Query:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN
        MDTS+PS FVN  LLR +IG++VR VIQV     G + GKSTDD QI V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FD  +  E  +++N
Subjt:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN

Q9SDK9 Replication protein A 14 kDa subunit1.3e-2252.33Show/hide
Query:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTS P+ FVN E+L++++GRRVR V+Q Q E  G++ G+STD +Q+T+KG+   P+S +VE+IGIA+ +++IRA+V T+FG++FD
Subjt:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein2.1e-2555.56Show/hide
Query:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN
        MDTS+PS FVN  LLR +IG++VR VIQV     G + GKSTDD QI V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FD  +  E  +++N
Subjt:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein2.1e-2555.56Show/hide
Query:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN
        MDTS+PS FVN  LLR +IG++VR VIQV     G + GKSTDD QI V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FD  +  E  +++N
Subjt:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein7.1e-2961.22Show/hide
Query:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN
        MDTS+P+ FVN  LLR YIG++VRAVIQV     G + GKSTDD QI VKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD+ +  E  +++N
Subjt:  MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGACTGTATATTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAGTCTGAAGGCAACGGAGTCAT
ATTCGGTAAATCAACAGATGATAACCAGATTACCGTGAAAGGTTCCCCACCCTTTCCTCTTTCGAAGTTTGTCGAGGTCATTGGGATTGCTGATACCGACAAATCCATAC
GAGCTGATGTTTGGACCAATTTTGGTGATTCATTTGATCTTTTCAGCATAGAGGAGAAGGGGGAGATCTCGAACTCCCTTAGCATTTTGCCAAAACAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGACTGTATATTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAGTCTGAAGGCAACGGAGTCAT
ATTCGGTAAATCAACAGATGATAACCAGATTACCGTGAAAGGTTCCCCACCCTTTCCTCTTTCGAAGTTTGTCGAGGTCATTGGGATTGCTGATACCGACAAATCCATAC
GAGCTGATGTTTGGACCAATTTTGGTGATTCATTTGATCTTTTCAGCATAGAGGAGAAGGGGGAGATCTCGAACTCCCTTAGCATTTTGCCAAAACAGTGA
Protein sequenceShow/hide protein sequence
MDTSNPSVFVNAELLRLYIGRRVRAVIQVQSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDLFSIEEKGEISNSLSILPKQ