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HG10020259 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10020259
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr04:30316096..30316392
RNA-Seq ExpressionHG10020259
SyntenyHG10020259
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG73320.1 hypothetical protein EZV62_001899 [Acer yangbiense]2.1e-0534.04Show/hide
Query:  ETLALLFGLKLVQRMCISIVHVEIDYEALVNIIKKDSGRFSSLKVILCEIKNQMLKINMKSFSHIPRLRNNVAHELFKWAWDNEGSGEWYVSPP
        E + +L G+ L    C+  + VE D + +VN+I  D    S + +I+ +I++ M ++ ++S S +P   N VAH L K+A  N GS  W  S P
Subjt:  ETLALLFGLKLVQRMCISIVHVEIDYEALVNIIKKDSGRFSSLKVILCEIKNQMLKINMKSFSHIPRLRNNVAHELFKWAWDNEGSGEWYVSPP
TrEMBL top hitse value%identityAlignment
A0A5C7IVJ7 RNase H domain-containing protein1.0e-0534.04Show/hide
Query:  ETLALLFGLKLVQRMCISIVHVEIDYEALVNIIKKDSGRFSSLKVILCEIKNQMLKINMKSFSHIPRLRNNVAHELFKWAWDNEGSGEWYVSPP
        E + +L G+ L    C+  + VE D + +VN+I  D    S + +I+ +I++ M ++ ++S S +P   N VAH L K+A  N GS  W  S P
Subjt:  ETLALLFGLKLVQRMCISIVHVEIDYEALVNIIKKDSGRFSSLKVILCEIKNQMLKINMKSFSHIPRLRNNVAHELFKWAWDNEGSGEWYVSPP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGGGAGACTCTTGCTCTCCTCTTTGGGTTGAAGCTTGTCCAACGAATGTGCATCTCTATTGTTCATGTGGAGATCGATTACGAGGCTTTGGTCAATATTATTAA
GAAGGATTCTGGGAGGTTCTCTTCTTTGAAGGTTATTTTGTGTGAAATTAAGAATCAGATGTTAAAAATCAATATGAAGAGTTTTTCTCATATCCCTAGATTACGTAACA
ATGTTGCTCATGAATTATTTAAGTGGGCATGGGATAACGAGGGAAGTGGGGAGTGGTATGTTAGCCCTCCCAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGGGAGACTCTTGCTCTCCTCTTTGGGTTGAAGCTTGTCCAACGAATGTGCATCTCTATTGTTCATGTGGAGATCGATTACGAGGCTTTGGTCAATATTATTAA
GAAGGATTCTGGGAGGTTCTCTTCTTTGAAGGTTATTTTGTGTGAAATTAAGAATCAGATGTTAAAAATCAATATGAAGAGTTTTTCTCATATCCCTAGATTACGTAACA
ATGTTGCTCATGAATTATTTAAGTGGGCATGGGATAACGAGGGAAGTGGGGAGTGGTATGTTAGCCCTCCCAAATAG
Protein sequenceShow/hide protein sequence
MEGETLALLFGLKLVQRMCISIVHVEIDYEALVNIIKKDSGRFSSLKVILCEIKNQMLKINMKSFSHIPRLRNNVAHELFKWAWDNEGSGEWYVSPPK