CuGenDBv2

Gene ID	HG10020278
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	E3 ubiquitin-protein ligase SGR9, amyloplastic
Genome location	Chr04:30499174..30499997
RNA-Seq Expression	HG10020278
Synteny	HG10020278
Gene Ontology terms	GO:0016567 - protein ubiquitination (biological process) GO:0005737 - cytoplasm (cellular component) GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044054.1 E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis melo var. makuwa]

5.2e-92

69.71

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Query:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVL
        MAAL+ LSPP L+DLSHSIFS++H HRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLAR LLSALRRLSRPFQSPSKLLPYHPS AAISPQDLDAAVL
Subjt:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVL

Query:  LLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL----------------------
        LLLLCEVRQHNPAALRTPITKWRATLCRIYS+S+LTISG+ATGGGGALIPYI+TV RCWKFVGFVGSCGGK                             
Subjt:  LLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL----------------------

Query:  -------------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD
                            L+ W     W          RFQLPTDD+FGEIQRLWEIL KVGSTMCT SDGD
Subjt:  -------------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD

XP_004137953.1 E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis sativus]

7.6e-91

69.23

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Query:  AALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLL
        AAL+ LSPP L+DLSHSIFS+IH HRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLAR LLSALRRLSRPFQSPSKLLPYHPS AAISPQDLDAAVLL
Subjt:  AALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLL

Query:  LLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL-----------------------
        LLLCEVRQHNPAALRTPITKWRATLC+IYSDS+LT+SG+ATGGGGALIPYI+TV RCWKFVGFVGSCGGK                              
Subjt:  LLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL-----------------------

Query:  ------------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD
                           L+ W     W          RFQLPTDD+ GEIQRLWEIL KVGSTMCT SDGD
Subjt:  ------------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD

XP_016899723.1 PREDICTED: E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis melo]

5.2e-92

69.71

Show/hide

Query:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVL
        MAAL+ LSPP L+DLSHSIFS++H HRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLAR LLSALRRLSRPFQSPSKLLPYHPS AAISPQDLDAAVL
Subjt:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVL

Query:  LLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL----------------------
        LLLLCEVRQHNPAALRTPITKWRATLCRIYS+S+LTISG+ATGGGGALIPYI+TV RCWKFVGFVGSCGGK                             
Subjt:  LLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL----------------------

Query:  -------------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD
                            L+ W     W          RFQLPTDD+FGEIQRLWEIL KVGSTMCT SDGD
Subjt:  -------------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD

XP_022145706.1 E3 ubiquitin-protein ligase SGR9, amyloplastic [Momordica charantia]

9.9e-83

64.58

Show/hide

Query:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVL
        MAALSALSP  LSDLSHSIFSDIHH RRRLTFILSSPTLFSLTLRHLNSLSLSHKSLL+AR LLSALRRL  PFQ P+K LP HPS AAI+P+DLDAAVL
Subjt:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVL

Query:  LLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL----------------------
        LLLLCEVRQHNPAAL TP+ KWRA LCRIYSDSIL+ISG+ +GGG  ++PY+ETVARCWKFVGFVGSCGGK                             
Subjt:  LLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL----------------------

Query:  ----------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD
                         L+ W     W          RFQLPTDD+F EIQRLWEILLK+GST+ T+SDGD
Subjt:  ----------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD

XP_038905798.1 E3 ubiquitin-protein ligase SGR9, amyloplastic [Benincasa hispida]

6.8e-92

71.17

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Query:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVL
        MAALSALSPP LSDLSHSIFSDIH HRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLAR LLS LRRLS PFQS SKL P+HPS A ISPQDLDAAVL
Subjt:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVL

Query:  LLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL----------------------
        LLLLCEVRQHNPAALRTPITKWRATLCRIYSDS+LTISG+ATGGGGALIPYIETV RCWKFVGFVGSCGGKA                            
Subjt:  LLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL----------------------

Query:  -------------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD
                            L+ W     W          RFQLPTDDIFGEIQRLWEILLKVGSTMCT SDGD
Subjt:  -------------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LAQ3 RING-type domain-containing protein

3.7e-91

69.23

Show/hide

Query:  AALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLL
        AAL+ LSPP L+DLSHSIFS+IH HRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLAR LLSALRRLSRPFQSPSKLLPYHPS AAISPQDLDAAVLL
Subjt:  AALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLL

Query:  LLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL-----------------------
        LLLCEVRQHNPAALRTPITKWRATLC+IYSDS+LT+SG+ATGGGGALIPYI+TV RCWKFVGFVGSCGGK                              
Subjt:  LLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL-----------------------

Query:  ------------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD
                           L+ W     W          RFQLPTDD+ GEIQRLWEIL KVGSTMCT SDGD
Subjt:  ------------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD

A0A1S4DUS9 E3 ubiquitin-protein ligase SGR9, amyloplastic

2.5e-92

69.71

Show/hide

Query:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVL
        MAAL+ LSPP L+DLSHSIFS++H HRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLAR LLSALRRLSRPFQSPSKLLPYHPS AAISPQDLDAAVL
Subjt:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVL

Query:  LLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL----------------------
        LLLLCEVRQHNPAALRTPITKWRATLCRIYS+S+LTISG+ATGGGGALIPYI+TV RCWKFVGFVGSCGGK                             
Subjt:  LLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL----------------------

Query:  -------------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD
                            L+ W     W          RFQLPTDD+FGEIQRLWEIL KVGSTMCT SDGD
Subjt:  -------------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD

A0A5A7TLA8 E3 ubiquitin-protein ligase SGR9, amyloplastic

2.5e-92

69.71

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Query:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVL
        MAAL+ LSPP L+DLSHSIFS++H HRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLAR LLSALRRLSRPFQSPSKLLPYHPS AAISPQDLDAAVL
Subjt:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVL

Query:  LLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL----------------------
        LLLLCEVRQHNPAALRTPITKWRATLCRIYS+S+LTISG+ATGGGGALIPYI+TV RCWKFVGFVGSCGGK                             
Subjt:  LLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL----------------------

Query:  -------------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD
                            L+ W     W          RFQLPTDD+FGEIQRLWEIL KVGSTMCT SDGD
Subjt:  -------------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD

A0A6J1CX45 E3 ubiquitin-protein ligase SGR9, amyloplastic

4.8e-83

64.58

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Query:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVL
        MAALSALSP  LSDLSHSIFSDIHH RRRLTFILSSPTLFSLTLRHLNSLSLSHKSLL+AR LLSALRRL  PFQ P+K LP HPS AAI+P+DLDAAVL
Subjt:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVL

Query:  LLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL----------------------
        LLLLCEVRQHNPAAL TP+ KWRA LCRIYSDSIL+ISG+ +GGG  ++PY+ETVARCWKFVGFVGSCGGK                             
Subjt:  LLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL----------------------

Query:  ----------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD
                         L+ W     W          RFQLPTDD+F EIQRLWEILLK+GST+ T+SDGD
Subjt:  ----------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD

A0A6J1F6V7 E3 ubiquitin-protein ligase SGR9, amyloplastic

3.8e-80

64.23

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Query:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVL
        MAALS LS P LSDLSHSIFSD+H  RRRLTFILSSPTLFS TLRHLNSLSLSHKSLL+AR LLSALRRLSRPFQ+PSK  P+HPS AA++P+DLDAAVL
Subjt:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVL

Query:  LLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGS-CGGKAGERWRL---------------------
        LLLLC+VRQHNPAAL TPIT+WR+TLCRIYSDS+LTISG+ATGG GA IPYIETVARCWKFVGFV S  GGKA                           
Subjt:  LLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGS-CGGKAGERWRL---------------------

Query:  -------------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD
                            L+ W     W          RFQLPTDDIFGEIQRLW+IL+KVGS    SSDGD
Subjt:  -------------------RLWRWWSFRRW----------RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD

SwissProt top hits

e value

%identity

Alignment

Q8GXF8 E3 ubiquitin-protein ligase SGR9, amyloplastic

4.4e-33

40.73

Show/hide

Query:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIA-AISPQDLDAAV
        MA+LSALSP  L++L+HSI S  HHHRRRL  +LSSPTLFSLTLRHL SLSL  K+ L+A  LLS L     P     K   +H S A  +  +DLDA V
Subjt:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIA-AISPQDLDAAV

Query:  LLLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILT-ISGVATGGGGALIPYIETVARCWKFVGFVGS-------------------------------
        LLL LCE  Q +P  L      WR  L   YS+++L+  SG+ T   G L+PYIET+ RC +FV  +G                                
Subjt:  LLLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILT-ISGVATGGGGALIPYIETVARCWKFVGFVGS-------------------------------

Query:  --CGGKAGE-------------------------RWRLRLWRWWSFRR----WRFQLPTDDIFGEIQRLWEILLK
              AGE                          W+  L  W S +      RFQLPTDD+F EIQRLWEIL+K
Subjt:  --CGGKAGE-------------------------RWRLRLWRWWSFRR----WRFQLPTDDIFGEIQRLWEILLK

Arabidopsis top hits

e value

%identity

Alignment

AT5G02750.1 RING/U-box superfamily protein

3.1e-34

40.73

Show/hide

Query:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIA-AISPQDLDAAV
        MA+LSALSP  L++L+HSI S  HHHRRRL  +LSSPTLFSLTLRHL SLSL  K+ L+A  LLS L     P     K   +H S A  +  +DLDA V
Subjt:  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIA-AISPQDLDAAV

Query:  LLLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILT-ISGVATGGGGALIPYIETVARCWKFVGFVGS-------------------------------
        LLL LCE  Q +P  L      WR  L   YS+++L+  SG+ T   G L+PYIET+ RC +FV  +G                                
Subjt:  LLLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILT-ISGVATGGGGALIPYIETVARCWKFVGFVGS-------------------------------

Query:  --CGGKAGE-------------------------RWRLRLWRWWSFRR----WRFQLPTDDIFGEIQRLWEILLK
              AGE                          W+  L  W S +      RFQLPTDD+F EIQRLWEIL+K
Subjt:  --CGGKAGE-------------------------RWRLRLWRWWSFRR----WRFQLPTDDIFGEIQRLWEILLK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCGCCCTCTCCGCCCTCTCTCCGCCGTGTCTCTCCGATCTCTCCCACTCCATCTTCTCCGACATTCACCACCACCGCCGCCGCCTCACCTTCATCCTCTCTTCCCC
AACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCCTTGCCCGCCTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCT
TCCAGTCACCATCCAAGCTCCTCCCTTACCACCCTTCCATCGCCGCCATCTCCCCTCAAGACCTCGATGCCGCCGTCCTCCTCCTCCTCCTCTGTGAGGTTCGGCAACAC
AATCCAGCTGCCCTACGAACTCCGATCACCAAATGGCGCGCGACCCTCTGTAGAATCTACTCCGATTCAATATTGACGATCTCCGGTGTCGCCACCGGCGGGGGCGGGGC
TTTGATTCCGTACATTGAGACGGTGGCGAGGTGTTGGAAATTCGTGGGGTTTGTTGGGAGTTGCGGAGGGAAGGCCGGAGAGAGGTGGCGGCTTCGCCTATGGCGGTGGT
GGAGCTTCCGTCGGTGGCGGTTTCAGCTTCCCACTGATGATATTTTCGGCGAGATCCAACGGCTCTGGGAGATCCTCCTCAAAGTGGGCTCCACAATGTGTACATCTTCT
GATGGAGATTAA

mRNA sequence

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Protein sequence

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MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQH
NPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRLRLWRWWSFRRWRFQLPTDDIFGEIQRLWEILLKVGSTMCTSS
DGD

HG10020278 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome