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HG10020307 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10020307
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionH/ACA ribonucleoprotein complex subunit 4
Genome locationChr04:30754827..30755578
RNA-Seq ExpressionHG10020307
SyntenyHG10020307
Gene Ontology termsGO:0001522 - pseudouridine synthesis (biological process)
GO:0006396 - RNA processing (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0009982 - pseudouridine synthase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008449192.1 PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 [Cucumis melo]2.3e-1873.33Show/hide
Query:  KSRKLDEETKAAPTKKLKAEKTEEDEEVEEVGKKEKKKKKEDREKDTAEEPWDEEKAEKSE--KKKEDKEAKEAATPETQKSEKKKKKKNKESGNDDSRF
        + RKLDE+T+AAP KKLK       EEVEEVGKKEKKKKK+D+EK TAEEP +EE  E SE  KKK+DKEAKEA TPET KSEKKKKKK+KESGNDDS+ 
Subjt:  KSRKLDEETKAAPTKKLKAEKTEEDEEVEEVGKKEKKKKKEDREKDTAEEPWDEEKAEKSE--KKKEDKEAKEAATPETQKSEKKKKKKNKESGNDDSRF

Query:  PAADV
        PAADV
Subjt:  PAADV

XP_011650148.1 H/ACA ribonucleoprotein complex subunit 4 [Cucumis sativus]3.2e-2076.19Show/hide
Query:  KSRKLDEETKAAPTKKLKAEKTEEDEEVEEVGKKEKKKKKEDREKDTAEEPWDEEKAEKSE--KKKEDKEAKEAATPETQKSEKKKKKKNKESGNDDSRF
        + RKLDEET+AAP KKLK       EEVEEVGKKEKKKKK+D+EKDTAEEP +EE  E SE  KKK+DKEAKEAATPET KSEKKKKKK+KESGNDDS+ 
Subjt:  KSRKLDEETKAAPTKKLKAEKTEEDEEVEEVGKKEKKKKKEDREKDTAEEPWDEEKAEKSE--KKKEDKEAKEAATPETQKSEKKKKKKNKESGNDDSRF

Query:  PAADV
        PAADV
Subjt:  PAADV

XP_022145634.1 H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia]1.5e-1773.53Show/hide
Query:  KSRKLDEETKAAPTKKLKAEKTEEDEEVEEVGKKEKKKKKEDREKDTAEEPWDEEKAEKSE--KKKEDKEAKEAATPETQKSEKKKKKKNKESGNDDSRF
        + RKLDE+ +AAPTKKLK EK EE EEV+EVGKKEKKKKK+D+EK    EP DEE  EKSE  KKK+DKEAKEA TPET+KSEKKKKKK+KESGND S+ 
Subjt:  KSRKLDEETKAAPTKKLKAEKTEEDEEVEEVGKKEKKKKKEDREKDTAEEPWDEEKAEKSE--KKKEDKEAKEAATPETQKSEKKKKKKNKESGNDDSRF

Query:  PA
        PA
Subjt:  PA

XP_022145634.1 H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia]1.1e-0989.13Show/hide
Query:  MSEVEVSRSE-KKKKHRSKDEEVSPAVGSDEQSQKDVADFMIKPQS
        MSEVE+SRSE KKKKHRSKDE+VSPAVGSDEQ QKD ADFMIKPQS
Subjt:  MSEVEVSRSE-KKKKHRSKDEEVSPAVGSDEQSQKDVADFMIKPQS

XP_022145634.1 H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia]4.3e-1773.39Show/hide
Query:  KSRKLDEETKAAPTKKLKAEKTEEDEEVEEVGKKE-KKKKKEDREKDTAEEPWDEEKAEKSEKK-----KEDKEAKEAATPETQKSEKKKKKKNKESGND
        + RKLDEET+AAP KKLKAEK EE E  EEVGKKE KKKKK+D+EK TAEEP DEE  E SEKK     KE KEAKEA TPETQKS+KKKKKK+ ESGND
Subjt:  KSRKLDEETKAAPTKKLKAEKTEEDEEVEEVGKKE-KKKKKEDREKDTAEEPWDEEKAEKSEKK-----KEDKEAKEAATPETQKSEKKKKKKNKESGND

Query:  DSRFPAADV
        DS+  AADV
Subjt:  DSRFPAADV

XP_038894523.1 H/ACA ribonucleoprotein complex subunit 4-like [Benincasa hispida]8.2e-1670Show/hide
Query:  KSRKLDEETKAAPTKKLKAEKTEEDEEVEEVGKKE--KKKKKEDREKDTAEEPWDEEKAEKSEKK-----KEDKEAKEAATPETQKSEKKKKKKNKESGN
        + RKLDEET+AAP KKLKA+K E+ E  EEVGKKE  KKKKK+D+EK TAEEP DEE  E SEKK     KE KEAKEA TPET+KS+KKKKKK+ ESGN
Subjt:  KSRKLDEETKAAPTKKLKAEKTEEDEEVEEVGKKE--KKKKKEDREKDTAEEPWDEEKAEKSEKK-----KEDKEAKEAATPETQKSEKKKKKKNKESGN

Query:  DDSRFPAADV
        DDS   AADV
Subjt:  DDSRFPAADV

TrEMBL top hitse value%identityAlignment
A0A1S3BLH6 LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 41.1e-1873.33Show/hide
Query:  KSRKLDEETKAAPTKKLKAEKTEEDEEVEEVGKKEKKKKKEDREKDTAEEPWDEEKAEKSE--KKKEDKEAKEAATPETQKSEKKKKKKNKESGNDDSRF
        + RKLDE+T+AAP KKLK       EEVEEVGKKEKKKKK+D+EK TAEEP +EE  E SE  KKK+DKEAKEA TPET KSEKKKKKK+KESGNDDS+ 
Subjt:  KSRKLDEETKAAPTKKLKAEKTEEDEEVEEVGKKEKKKKKEDREKDTAEEPWDEEKAEKSE--KKKEDKEAKEAATPETQKSEKKKKKKNKESGNDDSRF

Query:  PAADV
        PAADV
Subjt:  PAADV

A0A6J1CVU2 H/ACA ribonucleoprotein complex subunit 47.2e-1873.53Show/hide
Query:  KSRKLDEETKAAPTKKLKAEKTEEDEEVEEVGKKEKKKKKEDREKDTAEEPWDEEKAEKSE--KKKEDKEAKEAATPETQKSEKKKKKKNKESGNDDSRF
        + RKLDE+ +AAPTKKLK EK EE EEV+EVGKKEKKKKK+D+EK    EP DEE  EKSE  KKK+DKEAKEA TPET+KSEKKKKKK+KESGND S+ 
Subjt:  KSRKLDEETKAAPTKKLKAEKTEEDEEVEEVGKKEKKKKKEDREKDTAEEPWDEEKAEKSE--KKKEDKEAKEAATPETQKSEKKKKKKNKESGNDDSRF

Query:  PA
        PA
Subjt:  PA

A0A6J1CVU2 H/ACA ribonucleoprotein complex subunit 45.6e-1089.13Show/hide
Query:  MSEVEVSRSE-KKKKHRSKDEEVSPAVGSDEQSQKDVADFMIKPQS
        MSEVE+SRSE KKKKHRSKDE+VSPAVGSDEQ QKD ADFMIKPQS
Subjt:  MSEVEVSRSE-KKKKHRSKDEEVSPAVGSDEQSQKDVADFMIKPQS

A0A6J1CVU2 H/ACA ribonucleoprotein complex subunit 45.4e-1368.57Show/hide
Query:  KSRKLDEETKAAPTKKLKAEKTEEDEEVEEVGKKEKKKKKEDREKDTAEEPWDEEKAEKSE--KKKEDKEAKEAATP-ETQKSEKKKKKKNKESGNDDSR
        + RKLDEET+AAP KKLKAEKTE+ EEVEE GKKEKKKKK+D+EK +  EP DEE   + E  KKK+DKE KEA TP ETQKSEKKKKKK+KESG  D +
Subjt:  KSRKLDEETKAAPTKKLKAEKTEEDEEVEEVGKKEKKKKKEDREKDTAEEPWDEEKAEKSE--KKKEDKEAKEAATP-ETQKSEKKKKKKNKESGNDDSR

Query:  FPAAD
           AD
Subjt:  FPAAD

A0A6J1F3Q2 H/ACA ribonucleoprotein complex subunit 4-like6.1e-0986.96Show/hide
Query:  MSEVEVSRSE-KKKKHRSKDEEVSPAVGSDEQSQKDVADFMIKPQS
        MS VE+SRSE KKKKHRSKD+EVSPAVGSDEQ  KDVADFMIKPQS
Subjt:  MSEVEVSRSE-KKKKHRSKDEEVSPAVGSDEQSQKDVADFMIKPQS

A0A6J1F3Q2 H/ACA ribonucleoprotein complex subunit 4-like3.5e-1267.31Show/hide
Query:  KSRKLDEETKAAPTKKLKAEKTEEDEEVEEVGKKEKKKKKEDREKDTAEEPWDEEKAEKSE-KKKEDKEAKEAATP-ETQKSEKKKKKKNKESGNDDSRF
        + RKLDEET+AAP KKLKAEKTE+ EEVEE GKKEKKKKK+  ++  + EP DEE  E+SE KKK+DKE KEA TP E QKSEKKKKKK+KESG  D + 
Subjt:  KSRKLDEETKAAPTKKLKAEKTEEDEEVEEVGKKEKKKKKEDREKDTAEEPWDEEKAEKSE-KKKEDKEAKEAATP-ETQKSEKKKKKKNKESGNDDSRF

Query:  PAAD
          AD
Subjt:  PAAD

A0A6J1I1U9 H/ACA ribonucleoprotein complex subunit 4-like4.0e-0882.61Show/hide
Query:  MSEVEVSRSE-KKKKHRSKDEEVSPAVGSDEQSQKDVADFMIKPQS
        MS+VE+SRSE KKKKHRSKDEEVSP V SDEQ  KDVADF+IKPQS
Subjt:  MSEVEVSRSE-KKKKHRSKDEEVSPAVGSDEQSQKDVADFMIKPQS

A0A6J1J6M3 H/ACA ribonucleoprotein complex subunit 4-like6.1e-0986.96Show/hide
Query:  MSEVEVSRSE-KKKKHRSKDEEVSPAVGSDEQSQKDVADFMIKPQS
        MS VE+SRSE KKKKHRSKD+EVSPAVGSDEQ  KDVADFMIKPQS
Subjt:  MSEVEVSRSE-KKKKHRSKDEEVSPAVGSDEQSQKDVADFMIKPQS

A0A6J1J6M3 H/ACA ribonucleoprotein complex subunit 4-like2.9e-1171.43Show/hide
Query:  KSRKLDEETK-AAPTKKLKAEKTEEDEEVEEVGKKEKKKKKEDREKDTAEEPWDEEKAEKSE--KKKEDKEAKEAATPETQKSE-KKKKKKNKESGND
        + RK DEET+ AAP KKLK EK EE EEVEE GKKEKKKKK+D+EK   E   D+EKAEK E  KKK+DK+AKEA TPET+KSE KKKKKK+KESGND
Subjt:  KSRKLDEETK-AAPTKKLKAEKTEEDEEVEEVGKKEKKKKKEDREKDTAEEPWDEEKAEKSE--KKKEDKEAKEAATPETQKSE-KKKKKKNKESGND

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGAAGTTGAGGTTTCTCGTTCGGAGAAGAAGAAGAAGCACCGGAGCAAGGATGAGGAAGTGTCACCGGCTGTCGGTTCCGACGAGCAGTCGCAGAAGGATGTTGC
TGACTTTATGATCAAGCCTCAAAGTTTATTACTCCTCCGTGGTACTATCGACCCGAAGGGAACTGGGAACCTGATTGTGTGCATTGATCGAGCCACGCGGCTCGTGAAAT
CGCGAAAACTTGATGAAGAAACCAAAGCTGCTCCTACTAAGAAACTGAAGGCTGAAAAGACTGAAGAAGATGAAGAAGTTGAAGAAGTCGGGAAGAAAGAAAAGAAGAAG
AAGAAGGAAGACAGAGAGAAGGATACTGCAGAAGAACCTTGGGATGAGGAGAAGGCTGAGAAGTCAGAGAAGAAAAAGGAGGACAAAGAAGCTAAAGAAGCAGCTACACC
TGAGACACAGAAGTCCGAGAAGAAAAAGAAGAAGAAAAATAAGGAATCTGGAAATGATGATTCTCGCTTTCCTGCTGCTGATGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGAAGTTGAGGTTTCTCGTTCGGAGAAGAAGAAGAAGCACCGGAGCAAGGATGAGGAAGTGTCACCGGCTGTCGGTTCCGACGAGCAGTCGCAGAAGGATGTTGC
TGACTTTATGATCAAGCCTCAAAGTTTATTACTCCTCCGTGGTACTATCGACCCGAAGGGAACTGGGAACCTGATTGTGTGCATTGATCGAGCCACGCGGCTCGTGAAAT
CGCGAAAACTTGATGAAGAAACCAAAGCTGCTCCTACTAAGAAACTGAAGGCTGAAAAGACTGAAGAAGATGAAGAAGTTGAAGAAGTCGGGAAGAAAGAAAAGAAGAAG
AAGAAGGAAGACAGAGAGAAGGATACTGCAGAAGAACCTTGGGATGAGGAGAAGGCTGAGAAGTCAGAGAAGAAAAAGGAGGACAAAGAAGCTAAAGAAGCAGCTACACC
TGAGACACAGAAGTCCGAGAAGAAAAAGAAGAAGAAAAATAAGGAATCTGGAAATGATGATTCTCGCTTTCCTGCTGCTGATGTTTAA
Protein sequenceShow/hide protein sequence
MSEVEVSRSEKKKKHRSKDEEVSPAVGSDEQSQKDVADFMIKPQSLLLLRGTIDPKGTGNLIVCIDRATRLVKSRKLDEETKAAPTKKLKAEKTEEDEEVEEVGKKEKKK
KKEDREKDTAEEPWDEEKAEKSEKKKEDKEAKEAATPETQKSEKKKKKKNKESGNDDSRFPAADV