CuGenDBv2

Gene ID	HG10020325
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RING-type E3 ubiquitin transferase
Genome location	Chr04:30899516..30900097
RNA-Seq Expression	HG10020325
Synteny	HG10020325
Gene Ontology terms	GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR036410 - Heat shock protein DnaJ, cysteine-rich domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004137792.1 uncharacterized protein LOC101209846 [Cucumis sativus]

1.6e-59

90.37

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Query:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV
        MASLCSFPRISSTEPIKQ P  APFP SNH I+PS LS RQ +R HKRISTVVAAVGDVS+DGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV
Subjt:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV

Query:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK
        RRSE+ALRANAARKDQTQIVCARCNGLGKLNQVDK
Subjt:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK

XP_008442527.1 PREDICTED: uncharacterized protein LOC103486375 [Cucumis melo]

4.6e-59

89.63

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Query:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV
        MASLCSFPRISSTEPIKQ P  APFP SNHPIRPS LS RQ +R HKRISTVVAAVGDVS+DGTTYLIAGAIAVALVGTAFPI FSRKDLCPEC+GAGFV
Subjt:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV

Query:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK
        RRS +ALRANAARKDQTQIVCARCNGLGKLNQVDK
Subjt:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK

XP_022935020.1 uncharacterized protein LOC111442008 [Cucurbita moschata]

2.7e-59

89.63

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Query:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV
        MASLC+FPRISSTEPIKQ P AAPFP SN P+RPSALS RQ + KH+RISTVVAA+GDVSADGTTYLIAGA+AVALVGTAFPILFSRKDLCPECDGAGFV
Subjt:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV

Query:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK
        RRS AALRANAARKDQTQIVCARCNGLGKLNQVDK
Subjt:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK

XP_023528629.1 uncharacterized protein LOC111791489 [Cucurbita pepo subsp. pepo]

2.7e-59

89.63

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Query:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV
        MASLC+FPRISSTEPIKQ P AAPFP SN P+RPSALS RQ + KH+RISTVVAA+GDVSADGTTYLIAGA+AVALVGTAFPILFSRKDLCPECDGAGFV
Subjt:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV

Query:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK
        RRS AALRANAARKDQTQIVCARCNGLGKLNQVDK
Subjt:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK

XP_038905250.1 uncharacterized protein LOC120091333 [Benincasa hispida]

1.8e-63

95.56

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Query:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV
        MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALS RQI+ KHKRIS VVAAVGDVSADGTTYLIAGA+AVALVGTAFPILFSRKDLCPECDGAGFV
Subjt:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV

Query:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK
        RRS AALRANAARKDQTQIVCARCNGLGKLNQVDK
Subjt:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LDN8 Uncharacterized protein

7.7e-60

90.37

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Query:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV
        MASLCSFPRISSTEPIKQ P  APFP SNH I+PS LS RQ +R HKRISTVVAAVGDVS+DGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV
Subjt:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV

Query:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK
        RRSE+ALRANAARKDQTQIVCARCNGLGKLNQVDK
Subjt:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK

A0A1S3B5E7 uncharacterized protein LOC103486375

2.2e-59

89.63

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Query:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV
        MASLCSFPRISSTEPIKQ P  APFP SNHPIRPS LS RQ +R HKRISTVVAAVGDVS+DGTTYLIAGAIAVALVGTAFPI FSRKDLCPEC+GAGFV
Subjt:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV

Query:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK
        RRS +ALRANAARKDQTQIVCARCNGLGKLNQVDK
Subjt:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK

A0A6J1F9E5 uncharacterized protein LOC111442008

1.3e-59

89.63

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Query:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV
        MASLC+FPRISSTEPIKQ P AAPFP SN P+RPSALS RQ + KH+RISTVVAA+GDVSADGTTYLIAGA+AVALVGTAFPILFSRKDLCPECDGAGFV
Subjt:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV

Query:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK
        RRS AALRANAARKDQTQIVCARCNGLGKLNQVDK
Subjt:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK

A0A6J1I3R1 uncharacterized protein LOC111470276

1.7e-54

84.44

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Query:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV
        MASLCSFPRISS +PIK  P AAPFP SNHP RPSALS RQ +R  KR ST+VAA+GDVSADGTTYLIAGA+AVALVGTAFPILFSRKDLCP CDGAGFV
Subjt:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV

Query:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK
        R+S AALRANAARKDQ QIVC+RCNGLGKLNQVDK
Subjt:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK

A0A6J1J3Y5 uncharacterized protein LOC111482446

1.9e-58

89.63

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Query:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV
        MASLC+FPRISSTEPIKQ P AAPFP SN P+RPSALS RQ + KH R STVVAAVGDVSADGTTYLIAGA+AVALVGTAFPILFSRKDLCPECDGAGFV
Subjt:  MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFV

Query:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK
        RRS AALRANAARKDQTQIVCARCNGLGKLNQVDK
Subjt:  RRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G02160.1 unknown protein

1.9e-34

64.29

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Query:  ISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFVRRSEAALRA
        +SST  +K   +    PS N+ I P          K    S VVAAVGDVS+DGT YLI GAIAVALVGTAFPILF RKD CPECDGAGFVR+    LRA
Subjt:  ISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFVRRSEAALRA

Query:  NAARKDQTQIVCARCNGLGKLNQVDK
        NAARKD  QIVCA CNGLGKLNQ+DK
Subjt:  NAARKDQTQIVCARCNGLGKLNQVDK

Sequences

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CDS sequence

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ATGGCATCCTTATGTTCATTTCCTCGCATTTCTTCTACCGAACCCATCAAACAACCGCCCACCGCCGCCCCTTTTCCGTCCTCCAATCACCCAATAAGACCGTCGGCGCT
CTCCTTCCGTCAAATTACCCGCAAGCACAAGAGAATTTCTACAGTGGTCGCCGCCGTCGGAGACGTCTCCGCCGACGGCACCACCTACTTGATCGCCGGCGCCATCGCTG
TGGCTCTCGTCGGAACTGCCTTCCCTATCCTCTTCTCTCGCAAAGATCTGTGTCCGGAATGTGACGGCGCGGGGTTTGTCCGGCGATCGGAGGCGGCGCTGAGGGCAAAT
GCGGCTCGGAAAGACCAAACTCAAATCGTTTGTGCTCGTTGCAATGGCCTTGGGAAGCTCAACCAAGTGGACAAATAG

mRNA sequence

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Protein sequence

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MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFVRRSEAALRAN
AARKDQTQIVCARCNGLGKLNQVDK

HG10020325 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome