CuGenDBv2

Gene ID	HG10020346
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	PRA1 family protein
Genome location	Chr04:31035983..31043876
RNA-Seq Expression	HG10020346
Synteny	HG10020346
Gene Ontology terms	GO:0016192 - vesicle-mediated transport (biological process) GO:0005783 - endoplasmic reticulum (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR004895 - Prenylated rab acceptor PRA1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596390.1 PRA1 family protein A1, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-51

69.14

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Query:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------
        MDWGNVTAEDLIDALREVDWSSPPRPISEFFS                     YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND        
Subjt:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------

Query:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLL
                              PVIRGRPSAKR IYICGRPRWVFVL+FSSVSF+LWFISCGLLTVLWSLAFGLL
Subjt:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLL

XP_008442509.1 PREDICTED: PRA1 family protein A1-like [Cucumis melo]

1.8e-51

68.57

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Query:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------
        MDWGNVTAEDL+DALREVDWSSPPRPISEFFS                     YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND        
Subjt:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------

Query:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLL
                              PVIRGRPSAKR IYICGRPRWVFVLVFSSVSF+LWFISCGLLTVLWSL+FGLL
Subjt:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLL

XP_022742541.1 PRA1 family protein A1-like isoform X2 [Durio zibethinus]

8.0e-52

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Query:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLNDRPVIRGRP
        MDWGNVTAEDL+DALREVDWSSPPRP+SEFFS                     YRTNYFI+IV IL LGFLRRP+AI+AA LTALSIAFLNDRPVIRGRP
Subjt:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLNDRPVIRGRP

Query:  SAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLLVPPL
        SAKR I+ICGRPRWVFV VFSSVSFILW++SCGLLTVLW+LA GLL   L
Subjt:  SAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLLVPPL

XP_022934951.1 PRA1 family protein A1-like [Cucurbita moschata]

1.4e-51

69.14

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Query:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------
        MDWGNVTAEDLIDALREVDWSSPPRPISEFFS                     YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND        
Subjt:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------

Query:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLL
                              PVIRGRPSAKR IYICGRPRWVFVL+FSSVSF+LWFISCGLLTVLWSLAFGLL
Subjt:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLL

XP_038906252.1 PRA1 family protein A1-like [Benincasa hispida]

9.5e-53

70.86

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Query:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------
        MDWGNVTAEDLIDALREVDWSSPPRPISEFFS                     YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND        
Subjt:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------

Query:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLL
                              PVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLL
Subjt:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LFH8 PRA1 family protein

1.9e-51

68.57

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Query:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------
        MDWGNVTAEDLIDALREVDWSSPPRPISEFFS                     YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND        
Subjt:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------

Query:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLL
                              PVIRGRPSAKR IYICGRPRWVFVLVFSSVSF+ WFISCGLLTVLWSL+FGLL
Subjt:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLL

A0A1S3B6M0 PRA1 family protein

8.7e-52

68.57

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Query:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------
        MDWGNVTAEDL+DALREVDWSSPPRPISEFFS                     YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND        
Subjt:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------

Query:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLL
                              PVIRGRPSAKR IYICGRPRWVFVLVFSSVSF+LWFISCGLLTVLWSL+FGLL
Subjt:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLL

A0A5A7TML8 PRA1 family protein

8.7e-52

68.57

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Query:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------
        MDWGNVTAEDL+DALREVDWSSPPRPISEFFS                     YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND        
Subjt:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------

Query:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLL
                              PVIRGRPSAKR IYICGRPRWVFVLVFSSVSF+LWFISCGLLTVLWSL+FGLL
Subjt:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLL

A0A6J1F385 PRA1 family protein

6.6e-52

69.14

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Query:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------
        MDWGNVTAEDLIDALREVDWSSPPRPISEFFS                     YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND        
Subjt:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------

Query:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLL
                              PVIRGRPSAKR IYICGRPRWVFVL+FSSVSF+LWFISCGLLTVLWSLAFGLL
Subjt:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLL

A0A6P5YR11 PRA1 family protein

3.9e-52

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Query:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLNDRPVIRGRP
        MDWGNVTAEDL+DALREVDWSSPPRP+SEFFS                     YRTNYFI+IV IL LGFLRRP+AI+AA LTALSIAFLNDRPVIRGRP
Subjt:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLNDRPVIRGRP

Query:  SAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLLVPPL
        SAKR I+ICGRPRWVFV VFSSVSFILW++SCGLLTVLW+LA GLL   L
Subjt:  SAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLLVPPL

SwissProt top hits

e value

%identity

Alignment

Q8GWC3 PRA1 family protein A2

2.1e-34

46.02

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Query:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------
        MDW NV AED+I+ALREV+WS+PPR   EFFS                     YRTNYFI+++F+L L  + RPLA+V A LTALSIAFLND        
Subjt:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------

Query:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLLV
                              PVIRGR +A++T+Y+CG+PRWVFV+ F + S ++WF SCGLL VL++L   L V
Subjt:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLLV

Q8W115 PRA1 family protein A3

1.6e-31

45.45

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Query:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------
        MDW +V AED+I+ALREV+WS+ PR ++EFFS                     YRTNYFI+ VF+L L  + RPLAI+ A LTALS+AFLND        
Subjt:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------

Query:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLLV
                              PVIRGR + ++T+YICG+PR VFVL+  + SF+LWF SCGLL VL++L   LL+
Subjt:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLLV

Q9LZM7 PRA1 family protein A1

1.3e-36

54.82

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Query:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------
        MDWGNVT +DL DALREVDWSSPPRP SEFFS                     YRTNYFIMIV IL LG L RPLAI AA LTALS+AFLND        
Subjt:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------

Query:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTV
                              PV RGRPS+KR I++CG+PRWVFVL  S VSF LW+IS GLL V
Subjt:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTV

Arabidopsis top hits

e value

%identity

Alignment

AT3G11397.1 prenylated RAB acceptor 1.A3

1.2e-32

45.45

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Query:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------
        MDW +V AED+I+ALREV+WS+ PR ++EFFS                     YRTNYFI+ VF+L L  + RPLAI+ A LTALS+AFLND        
Subjt:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------

Query:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLLV
                              PVIRGR + ++T+YICG+PR VFVL+  + SF+LWF SCGLL VL++L   LL+
Subjt:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLLV

AT3G11402.2 Cysteine/Histidine-rich C1 domain family protein

1.2e-32

45.45

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Query:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------
        MDW +V AED+I+ALREV+WS+ PR ++EFFS                     YRTNYFI+ VF+L L  + RPLAI+ A LTALS+AFLND        
Subjt:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------

Query:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLLV
                              PVIRGR + ++T+YICG+PR VFVL+  + SF+LWF SCGLL VL++L   LL+
Subjt:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLLV

AT5G02040.1 prenylated RAB acceptor 1.A1

9.2e-38

54.82

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Query:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------
        MDWGNVT +DL DALREVDWSSPPRP SEFFS                     YRTNYFIMIV IL LG L RPLAI AA LTALS+AFLND        
Subjt:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------

Query:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTV
                              PV RGRPS+KR I++CG+PRWVFVL  S VSF LW+IS GLL V
Subjt:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTV

AT5G02040.2 prenylated RAB acceptor 1.A1

9.2e-38

54.82

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Query:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------
        MDWGNVT +DL DALREVDWSSPPRP SEFFS                     YRTNYFIMIV IL LG L RPLAI AA LTALS+AFLND        
Subjt:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------

Query:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTV
                              PV RGRPS+KR I++CG+PRWVFVL  S VSF LW+IS GLL V
Subjt:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTV

AT5G05987.1 prenylated RAB acceptor 1.A2

1.5e-35

46.02

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Query:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------
        MDW NV AED+I+ALREV+WS+PPR   EFFS                     YRTNYFI+++F+L L  + RPLA+V A LTALSIAFLND        
Subjt:  MDWGNVTAEDLIDALREVDWSSPPRPISEFFSS--------------------YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLND--------

Query:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLLV
                              PVIRGR +A++T+Y+CG+PRWVFV+ F + S ++WF SCGLL VL++L   L V
Subjt:  ---------------------RPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFISCGLLTVLWSLAFGLLV

Sequences

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CDS sequence

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ATGGATTGGGGCAACGTTACTGCTGAGGATCTGATCGACGCGCTTCGAGAGGTCGATTGGTCATCGCCTCCTCGCCCTATCTCCGAGTTCTTCTCCAGTTACCGAACCAA
CTATTTCATTATGATCGTTTTCATTCTTGCCCTGGGTTTTTTACGAAGGCCACTTGCTATCGTTGCTGCTTTTCTAACAGCACTCAGCATCGCTTTTCTGAATGACAGGC
CTGTTATCCGTGGACGCCCATCAGCTAAAAGAACAATATACATATGCGGACGTCCTCGATGGGTTTTTGTCTTGGTGTTCTCTTCCGTGAGTTTCATACTATGGTTCATT
TCTTGTGGTCTGTTGACTGTACTTTGGTCGCTTGCCTTTGGACTTCTCGTTCCTCCTTTGATCTCCCAGCGTGTTAAGAAAGGCCTTGCGATAGTGAACTATGACAAAGG
CTGGCTTGAGGGAGACCAGGCTTTGGCCACTGCTTGGTGTTTCATGATGCTGTTGGGCCTTTTGTGTTGTTGCCTCAGCACCAATCCCCGCCACCACCACGACTCCTCCG
CCGCTAGTTCCAGCTGCACTTGCGACGGCGGTTATGCAGGTGTTTGA

mRNA sequence

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Protein sequence

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MDWGNVTAEDLIDALREVDWSSPPRPISEFFSSYRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLNDRPVIRGRPSAKRTIYICGRPRWVFVLVFSSVSFILWFI
SCGLLTVLWSLAFGLLVPPLISQRVKKGLAIVNYDKGWLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV

HG10020346 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome