; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10020482 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10020482
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description50S ribosomal protein L17
Genome locationChr04:32175930..32176430
RNA-Seq ExpressionHG10020482
SyntenyHG10020482
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000456 - Ribosomal protein L17
IPR036373 - Ribosomal protein L17 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137669.1 50S ribosomal protein L17, chloroplastic [Cucumis sativus]5.1e-6896.35Show/hide
Query:  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHAL
        AD+NGFEHNF+IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHAL
Subjt:  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHAL

Query:  FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
        FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Subjt:  FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV

XP_008442307.1 PREDICTED: 50S ribosomal protein L17 [Cucumis melo]2.3e-6897.08Show/hide
Query:  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHAL
        AD+N FEHNFKIVD+GSR FAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHAL
Subjt:  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHAL

Query:  FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
        FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Subjt:  FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV

XP_010263291.1 PREDICTED: uncharacterized protein LOC104601596 [Nelumbo nucifera]4.8e-6692.03Show/hide
Query:  HADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHA
        H D   FEHNF I+D+GSRFFAMRHGK+VPKLNRPPDQRRALLRGLTTQLLKHGRIKTTR RASAMRKYVDKM+TLAKDGSLHKRRQALGFIYEKQIVHA
Subjt:  HADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHA

Query:  LFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
        LFAEVQDRYG+RNGGYTRIIRTLPRRGDNAPMAYIELV
Subjt:  LFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV

XP_022157331.1 50S ribosomal protein L17, chloroplastic [Momordica charantia]2.8e-6693.43Show/hide
Query:  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHAL
        +DF+ FEHNF IVDSG R+FAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTR RASAMRKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHAL
Subjt:  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHAL

Query:  FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
        FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Subjt:  FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV

XP_038906261.1 50S ribosomal protein L17, chloroplastic [Benincasa hispida]7.2e-7099.26Show/hide
Query:  DFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALF
        D+NGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALF
Subjt:  DFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALF

Query:  AEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
        AEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Subjt:  AEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV

TrEMBL top hitse value%identityAlignment
A0A0A0L9N9 Uncharacterized protein2.5e-6896.35Show/hide
Query:  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHAL
        AD+NGFEHNF+IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHAL
Subjt:  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHAL

Query:  FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
        FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Subjt:  FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV

A0A1S3B652 50S ribosomal protein L171.1e-6897.08Show/hide
Query:  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHAL
        AD+N FEHNFKIVD+GSR FAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHAL
Subjt:  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHAL

Query:  FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
        FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Subjt:  FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV

A0A1U8AKZ6 uncharacterized protein LOC1046015962.3e-6692.03Show/hide
Query:  HADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHA
        H D   FEHNF I+D+GSRFFAMRHGK+VPKLNRPPDQRRALLRGLTTQLLKHGRIKTTR RASAMRKYVDKM+TLAKDGSLHKRRQALGFIYEKQIVHA
Subjt:  HADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHA

Query:  LFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
        LFAEVQDRYG+RNGGYTRIIRTLPRRGDNAPMAYIELV
Subjt:  LFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV

A0A5N6RJK3 Uncharacterized protein9.8e-6590.51Show/hide
Query:  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHAL
        +++ GFEH+F I+D+G RFFAMRHG+RVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTR RASAMRKYVDKMITLAK+GSLHKRRQALGFIYEKQIVHAL
Subjt:  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHAL

Query:  FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
        FAEV DRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Subjt:  FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV

A0A6J1DXR7 50S ribosomal protein L17, chloroplastic1.4e-6693.43Show/hide
Query:  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHAL
        +DF+ FEHNF IVDSG R+FAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTR RASAMRKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHAL
Subjt:  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHAL

Query:  FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
        FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Subjt:  FAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV

SwissProt top hitse value%identityAlignment
B0C429 50S ribosomal protein L172.1e-4071.3Show/hide
Query:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRH  RV KL +P DQR+ALLR L+TQL++HGR+ TT+ RA A+R  V+KMITLAKDGSL  RRQALG+IY+KQ+VHALF +V DRYG+RNGGYTRIIRT
Subjt:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAYIEL
        + RRGDNA MA IEL
Subjt:  LPRRGDNAPMAYIEL

B1XJI3 50S ribosomal protein L177.3e-4168.1Show/hide
Query:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHG RVP+L RP DQR+ALLR LTTQL++HG++KTT+ RA A+R  VD+MITLAKDGSL  RR+ALG++Y+K +VHALFA+ +DRYG+R GGY+R++RT
Subjt:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAYIELV
        + RRGDNA MA IELV
Subjt:  LPRRGDNAPMAYIELV

O80363 50S ribosomal protein L17, chloroplastic4.7e-6486.76Show/hide
Query:  DFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALF
        D   FEH+F ++D+G R FAMRHG++VPKLNRPPDQRRALLRGLTTQLLKHGRIKTT+ RA A+RKYVDKMIT+AKDGSLHKRRQALGFIYEKQIVHALF
Subjt:  DFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALF

Query:  AEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
        AEV DRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Subjt:  AEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV

P82194 50S ribosomal protein L17, chloroplastic5.0e-5885.71Show/hide
Query:  IVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGER
        ++D+G RFFAM+HG+++ +L+RP DQRRALLRGLTTQLLKHGRIKTTR +ASAMRKYVDKMITLAK+GSLHKRRQALGFIYEKQIVHALFAEV +RYG+R
Subjt:  IVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGER

Query:  NGGYTRIIRTLPRRGDNAPMAYIELV
        NGGYTRIIRTLPRRGDNAPMAYIELV
Subjt:  NGGYTRIIRTLPRRGDNAPMAYIELV

Q9M385 50S ribosomal protein L17, chloroplastic7.2e-6588.97Show/hide
Query:  DFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALF
        D+  FE+ FKIVD G R +AMRHG+RVPKLNRPPDQR+ALLRGLTTQLLKHGRIKTTR RASAMRK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALF
Subjt:  DFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALF

Query:  AEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
        AEV DRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Subjt:  AEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV

Arabidopsis top hitse value%identityAlignment
AT3G54210.1 Ribosomal protein L17 family protein5.1e-6688.97Show/hide
Query:  DFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALF
        D+  FE+ FKIVD G R +AMRHG+RVPKLNRPPDQR+ALLRGLTTQLLKHGRIKTTR RASAMRK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALF
Subjt:  DFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALF

Query:  AEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
        AEV DRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Subjt:  AEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV

AT5G09770.1 Ribosomal protein L17 family protein3.7e-2449.07Show/hide
Query:  KLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNA
        KL RP   R ++LR + +QL+KH RI+TT T+A  +R+  D MI L K+GSL   R+A GF+    ++H +F E+  RY +R GGYTR++RT  R GD A
Subjt:  KLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNA

Query:  PMAYIELV
        PMAYIE +
Subjt:  PMAYIELV

AT5G64650.1 Ribosomal protein L17 family protein1.8e-2348.15Show/hide
Query:  KLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNA
        KL RP   R ++LR + +QL++H RI+TT T+A  +R+  D MI L K+GSL   R+A GF+    ++H +F E+  RY +R GGYTR++RT  R GD A
Subjt:  KLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNA

Query:  PMAYIELV
        PMAYIE +
Subjt:  PMAYIELV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTCCTGAGATTCATACAAGTTTCTATAGTTACTTTTCCGTGTACTAACTGTTGTAGAACCTGTGATGCGCTTGTCTATCATGCAGATTTCAACGGCTTTGAACA
TAACTTTAAAATTGTTGATAGTGGTAGCCGATTTTTTGCCATGAGACATGGAAAGCGGGTACCTAAGCTAAATAGGCCTCCTGACCAACGACGTGCACTATTGCGAGGGC
TCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACTACCAGAACAAGAGCAAGTGCTATGCGTAAGTATGTTGACAAAATGATTACATTAGCAAAGGACGGTTCCTTG
CATAAAAGGAGACAGGCTTTAGGCTTCATCTACGAAAAGCAGATTGTTCACGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAATGGTGGATATACCAGAAT
TATAAGAACACTTCCTAGGCGAGGGGACAATGCGCCTATGGCATACATTGAACTTGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTCCTGAGATTCATACAAGTTTCTATAGTTACTTTTCCGTGTACTAACTGTTGTAGAACCTGTGATGCGCTTGTCTATCATGCAGATTTCAACGGCTTTGAACA
TAACTTTAAAATTGTTGATAGTGGTAGCCGATTTTTTGCCATGAGACATGGAAAGCGGGTACCTAAGCTAAATAGGCCTCCTGACCAACGACGTGCACTATTGCGAGGGC
TCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACTACCAGAACAAGAGCAAGTGCTATGCGTAAGTATGTTGACAAAATGATTACATTAGCAAAGGACGGTTCCTTG
CATAAAAGGAGACAGGCTTTAGGCTTCATCTACGAAAAGCAGATTGTTCACGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAATGGTGGATATACCAGAAT
TATAAGAACACTTCCTAGGCGAGGGGACAATGCGCCTATGGCATACATTGAACTTGTCTGA
Protein sequenceShow/hide protein sequence
MEFLRFIQVSIVTFPCTNCCRTCDALVYHADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSL
HKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV