CuGenDBv2

Gene ID	HG10020510
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein-serine/threonine phosphatase
Genome location	Chr05:141623..142143
RNA-Seq Expression	HG10020510
Synteny	HG10020510
Gene Ontology terms	GO:0006369 - termination of RNA polymerase II transcription (biological process) GO:0006378 - mRNA polyadenylation (biological process) GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain (biological process) GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0008420 - RNA polymerase II CTD heptapeptide repeat phosphatase activity (molecular function)
InterPro domains	IPR006811 - RNA polymerase II subunit A

Homology

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GenBank top hits

e value

%identity

Alignment

RVW90718.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Vitis vinifera]

3.1e-58

80.14

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Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MK+RYA+VCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKHMFDDLRRKDP+LYP SS               YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEG
        MLKRN++VKTAPQRWQDNAADG FDVVFTFEEKVFDMV+EG
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEG

XP_004137380.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis sativus]

3.1e-58

84.29

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Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MKYRYA+VCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
        MLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIE
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE

XP_008446784.1 PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis melo]

3.1e-58

84.29

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Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MKYRYA+VCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
        MLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIE
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE

XP_022948646.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita moschata]

3.7e-59

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Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MKYRYA+VCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
        MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE

XP_022997876.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita maxima]

3.7e-59

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Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MKYRYA+VCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
        MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQ65 Protein-serine/threonine phosphatase

2.3e-59

84.4

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Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MKYRYA+VCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEG
        MLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIEG
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEG

A0A1S3BFX9 Protein-serine/threonine phosphatase

1.5e-58

84.29

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Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MKYRYA+VCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
        MLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIE
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE

A0A438I1X4 Protein-serine/threonine phosphatase

1.5e-58

80.14

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Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MK+RYA+VCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKHMFDDLRRKDP+LYP SS               YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEG
        MLKRN++VKTAPQRWQDNAADG FDVVFTFEEKVFDMV+EG
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEG

A0A6J1G9U0 Protein-serine/threonine phosphatase

1.8e-59

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Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MKYRYA+VCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
        MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE

A0A6J1K8Q5 Protein-serine/threonine phosphatase

1.8e-59

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Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        MKYRYA+VCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
        MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE

SwissProt top hits

e value

%identity

Alignment

Q17QI2 RNA polymerase II subunit A C-terminal domain phosphatase SSU72

9.9e-31

52.55

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Query:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK
        R AVVCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD EL                    Y +NGIL ML 
Subjt:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK

Query:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
        RN  +K  P+R+Q N  D  FD++ T EE+V+D V+E
Subjt:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE

Q4KLK9 RNA polymerase II subunit A C-terminal domain phosphatase SSU72

9.9e-31

52.55

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Query:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK
        R AVVCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD EL                    Y +NGIL ML 
Subjt:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK

Query:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
        RN  +K  P+R+Q N  D  FD++ T EE+V+D V+E
Subjt:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE

Q6NRQ7 RNA polymerase II subunit A C-terminal domain phosphatase SSU72

7.6e-31

52.55

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Query:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK
        R AVVCSSNQNRSMEAH+IL  + FNV S+GTG HVKLPGP+  +PNVYDF T Y+ M+ DL +KD EL                    Y +NGIL ML 
Subjt:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK

Query:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
        RN  +K  P+R+Q N  D +FD+V T EE+V+D V+E
Subjt:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE

Q9CY97 RNA polymerase II subunit A C-terminal domain phosphatase SSU72

7.6e-31

52.55

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Query:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK
        R AVVCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD EL                    Y +NGIL ML 
Subjt:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK

Query:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
        RN  +K  P+R+Q N  D  FD++ T EE+V+D V+E
Subjt:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE

Q9NP77 RNA polymerase II subunit A C-terminal domain phosphatase SSU72

9.9e-31

52.55

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Query:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK
        R AVVCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD EL                    Y +NGIL ML 
Subjt:  RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLK

Query:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
        RN  +K  P+R+Q N  D  FD++ T EE+V+D V+E
Subjt:  RNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE

Arabidopsis top hits

e value

%identity

Alignment

AT1G73820.1 Ssu72-like family protein

1.0e-51

69.29

Show/hide

Query:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP
        M++RYA+VCSSNQNRSMEAH++LK +G +V+SYGTG+HVKLPGPSLREPNVYDFGTPYK MFD+LRRKDPEL                    YKRNGIL 
Subjt:  MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
        M+KRN +VK APQRWQDNA DG FDVV TFEEKVFD V+E
Subjt:  MLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE

Sequences

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CDS sequence

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ATGAAGTATCGTTATGCAGTGGTTTGCTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGC
TCACGTGAAGCTTCCTGGACCTTCTCTCCGGGAACCCAATGTATACGATTTTGGTACCCCTTACAAGCACATGTTCGATGATCTCCGTCGAAAAGATCCTGAACTGTATC
CTTTTTCTTCTCCTCCCTATCATTTCTCCCCCGAAAACGACCCGAAGACTGGTGGATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACG
GCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTTCTTTGACGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTCATTGAAGGTTAA

mRNA sequence

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Protein sequence

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MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLKRNAAVKT
APQRWQDNAADGFFDVVFTFEEKVFDMVIEG

HG10020510 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome