; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10020611 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10020611
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionGlycine-rich RNA-binding protein
Genome locationChr05:945886..946844
RNA-Seq ExpressionHG10020611
SyntenyHG10020611
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584410.1 Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]4.4e-4391.35Show/hide
Query:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA
        MAFLSKVGKIFSQSSAS I SDLQPSKLSIFQ+ RLMSSSKVF+GGLSYGTDDQSL+EAF KYGE+VEARVI DRDTGRSRGFGFVTFTANEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA

Query:  LDGQ
        LDGQ
Subjt:  LDGQ

XP_022923695.1 glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita moschata]1.3e-4290.38Show/hide
Query:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA
        MAFLSKVGKIFS+SSAS I SDLQPSKLSIFQ+ RLMSSSKVF+GGLSYGTDDQSL+EAF KYGE+VEARVI DRDTGRSRGFGFVTFTANEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA

Query:  LDGQ
        LDGQ
Subjt:  LDGQ

XP_022973197.1 glycine-rich RNA-binding protein 3, mitochondrial [Cucurbita maxima]2.8e-4289.42Show/hide
Query:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA
        MAFLSKVGK+F +SSAS I SDLQPSKLSIFQ+ RLMSSSKVF+GGLSYGTDDQSLREAF KYGE+VEARVI DRDTGRSRGFGFVTFTANEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA

Query:  LDGQ
        LDGQ
Subjt:  LDGQ

XP_022994220.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]3.7e-4289.42Show/hide
Query:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA
        MAFLSKVGKIFSQSSASRIGS  QPS+LSIFQ  RLMSSSKVF+GGLSYGTDD SLREAFTKYGE+VEARVI+DRDTGRSRGFGFVTF  NEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA

Query:  LDGQ
        LDGQ
Subjt:  LDGQ

XP_023001202.1 glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita maxima]4.8e-4289.42Show/hide
Query:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA
        MAFL KVGKIFS+SSAS I SDLQPSKLSIFQ+ RLMSSSKVF+GGLSYGTDDQSL+EAF KYGE+VEARVI DRDTGRSRGFGFVTFTANEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA

Query:  LDGQ
        LDGQ
Subjt:  LDGQ

TrEMBL top hitse value%identityAlignment
A0A6J1ECL7 glycine-rich RNA-binding protein 3, mitochondrial-like6.2e-4390.38Show/hide
Query:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA
        MAFLSKVGKIFS+SSAS I SDLQPSKLSIFQ+ RLMSSSKVF+GGLSYGTDDQSL+EAF KYGE+VEARVI DRDTGRSRGFGFVTFTANEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA

Query:  LDGQ
        LDGQ
Subjt:  LDGQ

A0A6J1GRM7 glycine-rich RNA-binding protein 4, mitochondrial-like5.2e-4288.46Show/hide
Query:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA
        MAFLSKVGKIFSQSSASRIGS  QPS+LSIFQ  R MSSSKVF+GGLSYGTDD SLREAFTKYGE+VEARVI+DRDTGRSRGFGFVTF  NEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA

Query:  LDGQ
        LDGQ
Subjt:  LDGQ

A0A6J1I6W1 glycine-rich RNA-binding protein 3, mitochondrial1.4e-4289.42Show/hide
Query:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA
        MAFLSKVGK+F +SSAS I SDLQPSKLSIFQ+ RLMSSSKVF+GGLSYGTDDQSLREAF KYGE+VEARVI DRDTGRSRGFGFVTFTANEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA

Query:  LDGQ
        LDGQ
Subjt:  LDGQ

A0A6J1K0M4 glycine-rich RNA-binding protein 4, mitochondrial-like1.8e-4289.42Show/hide
Query:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA
        MAFLSKVGKIFSQSSASRIGS  QPS+LSIFQ  RLMSSSKVF+GGLSYGTDD SLREAFTKYGE+VEARVI+DRDTGRSRGFGFVTF  NEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA

Query:  LDGQ
        LDGQ
Subjt:  LDGQ

A0A6J1KFU7 glycine-rich RNA-binding protein 3, mitochondrial-like2.3e-4289.42Show/hide
Query:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA
        MAFL KVGKIFS+SSAS I SDLQPSKLSIFQ+ RLMSSSKVF+GGLSYGTDDQSL+EAF KYGE+VEARVI DRDTGRSRGFGFVTFTANEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA

Query:  LDGQ
        LDGQ
Subjt:  LDGQ

SwissProt top hitse value%identityAlignment
Q43472 Glycine-rich RNA-binding protein blt8019.5e-1755.22Show/hide
Query:  KVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQALDGQGGD
        + F+GGL + TDDQSL+ AF+KYG+++++++I DR+TGRSRGFGFVTF ++E    AI+A++GQ  D
Subjt:  KVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQALDGQGGD

Q9C909 Glycine-rich RNA-binding protein 5, mitochondrial3.2e-2861.54Show/hide
Query:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA
        MAFLSKVG++FSQ+S+    S       S+ Q+ R MSSSK+F+GG+SY TD+  LREAF+KYGE+V+A++I+DR+TGRSRGF FVTFT+ EEAS+A+Q 
Subjt:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA

Query:  LDGQ
        LDGQ
Subjt:  LDGQ

Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial5.2e-3154.96Show/hide
Query:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA
        MAFLSK G I  Q++  ++ + +  S  S+FQ  R MSSSK+FIGG++Y  D+ SLREAFTKYGE+V+ RVI+DR+TGRSRGFGFVTFT++E ASSAIQA
Subjt:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA

Query:  LDGQ----------------GGDDFLGGKYG
        LDG+                 G  F GG YG
Subjt:  LDGQ----------------GGDDFLGGKYG

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial1.6e-1948.08Show/hide
Query:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA
        MAF +K+  I  Q     +         S+  + R M SSK+F+GGLS+GTDD SL++AFT +GE+ EA VI DR+TGRSRGFGFV+F+  + A++AI+ 
Subjt:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA

Query:  LDGQ
        +DG+
Subjt:  LDGQ

Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial1.2e-1950Show/hide
Query:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA
        MAF +K+G +  Q+    I S+      S+  + RLM S+K+FIGGLS+GTDD SLR+AF  +G++V+A+VI+DR+TGRSRGFGFV F     A++AI  
Subjt:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA

Query:  LDGQ
        +DG+
Subjt:  LDGQ

Arabidopsis top hitse value%identityAlignment
AT1G74230.1 glycine-rich RNA-binding protein 52.2e-2961.54Show/hide
Query:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA
        MAFLSKVG++FSQ+S+    S       S+ Q+ R MSSSK+F+GG+SY TD+  LREAF+KYGE+V+A++I+DR+TGRSRGF FVTFT+ EEAS+A+Q 
Subjt:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA

Query:  LDGQ
        LDGQ
Subjt:  LDGQ

AT4G13850.1 glycine-rich RNA-binding protein 28.5e-2150Show/hide
Query:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA
        MAF +K+G +  Q+    I S+      S+  + RLM S+K+FIGGLS+GTDD SLR+AF  +G++V+A+VI+DR+TGRSRGFGFV F     A++AI  
Subjt:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA

Query:  LDGQ
        +DG+
Subjt:  LDGQ

AT4G13850.2 glycine-rich RNA-binding protein 28.5e-2150Show/hide
Query:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA
        MAF +K+G +  Q+    I S+      S+  + RLM S+K+FIGGLS+GTDD SLR+AF  +G++V+A+VI+DR+TGRSRGFGFV F     A++AI  
Subjt:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA

Query:  LDGQ
        +DG+
Subjt:  LDGQ

AT4G13850.3 glycine-rich RNA-binding protein 28.5e-2150Show/hide
Query:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA
        MAF +K+G +  Q+    I S+      S+  + RLM S+K+FIGGLS+GTDD SLR+AF  +G++V+A+VI+DR+TGRSRGFGFV F     A++AI  
Subjt:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA

Query:  LDGQ
        +DG+
Subjt:  LDGQ

AT5G61030.1 glycine-rich RNA-binding protein 33.7e-3254.96Show/hide
Query:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA
        MAFLSK G I  Q++  ++ + +  S  S+FQ  R MSSSK+FIGG++Y  D+ SLREAFTKYGE+V+ RVI+DR+TGRSRGFGFVTFT++E ASSAIQA
Subjt:  MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQA

Query:  LDGQ----------------GGDDFLGGKYG
        LDG+                 G  F GG YG
Subjt:  LDGQ----------------GGDDFLGGKYG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTTCTTAGTAAAGTTGGAAAAATATTTAGTCAGAGTTCTGCATCAAGGATTGGTTCAGATTTGCAGCCTTCCAAGCTGTCTATCTTTCAAACTTTCAGATTAAT
GTCAAGTTCGAAAGTTTTTATTGGAGGCCTTTCTTACGGTACTGATGACCAGAGTCTGAGGGAAGCGTTCACCAAGTATGGGGAAATAGTTGAAGCGAGAGTGATAATGG
ATCGTGATACTGGTAGATCCAGAGGTTTTGGGTTTGTCACTTTCACTGCCAATGAAGAAGCATCTAGTGCTATTCAAGCTCTGGATGGACAGGGAGGAGATGATTTTTTG
GGAGGAAAGTATGGAGACGAGGATAACAACGATGTCTATGACAAAAGGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTTCTTAGTAAAGTTGGAAAAATATTTAGTCAGAGTTCTGCATCAAGGATTGGTTCAGATTTGCAGCCTTCCAAGCTGTCTATCTTTCAAACTTTCAGATTAAT
GTCAAGTTCGAAAGTTTTTATTGGAGGCCTTTCTTACGGTACTGATGACCAGAGTCTGAGGGAAGCGTTCACCAAGTATGGGGAAATAGTTGAAGCGAGAGTGATAATGG
ATCGTGATACTGGTAGATCCAGAGGTTTTGGGTTTGTCACTTTCACTGCCAATGAAGAAGCATCTAGTGCTATTCAAGCTCTGGATGGACAGGGAGGAGATGATTTTTTG
GGAGGAAAGTATGGAGACGAGGATAACAACGATGTCTATGACAAAAGGGCTTGA
Protein sequenceShow/hide protein sequence
MAFLSKVGKIFSQSSASRIGSDLQPSKLSIFQTFRLMSSSKVFIGGLSYGTDDQSLREAFTKYGEIVEARVIMDRDTGRSRGFGFVTFTANEEASSAIQALDGQGGDDFL
GGKYGDEDNNDVYDKRA