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HG10020626 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10020626
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA polymerase alpha subunit B
Genome locationChr05:1050489..1051034
RNA-Seq ExpressionHG10020626
SyntenyHG10020626
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0006260 - DNA replication (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR016722 - DNA polymerase alpha, subunit B


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652527.1 hypothetical protein Csa_013070, partial [Cucumis sativus]1.5e-4394.74Show/hide
Query:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI
        SFYPLYPPAEGVPLDFSLAP+ALDISVIPDILILPSDMKHFVKVISLGEG S EEQARC+CVNPGRLAKGEGGGTFVELNYFGRPDQINA VVSI
Subjt:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI

TYJ98951.1 DNA polymerase alpha subunit B [Cucumis melo var. makuwa]4.0e-4495.79Show/hide
Query:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI
        SFYPLYPPAEGVPLDFSLAP+ALDISVIPDILILPSDMKHFVKVISLGEG S EEQARC+CVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI
Subjt:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI

XP_004137446.1 DNA polymerase alpha subunit B [Cucumis sativus]1.5e-4394.74Show/hide
Query:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI
        SFYPLYPPAEGVPLDFSLAP+ALDISVIPDILILPSDMKHFVKVISLGEG S EEQARC+CVNPGRLAKGEGGGTFVELNYFGRPDQINA VVSI
Subjt:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI

XP_008452343.1 PREDICTED: DNA polymerase alpha subunit B [Cucumis melo]4.0e-4495.79Show/hide
Query:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI
        SFYPLYPPAEGVPLDFSLAP+ALDISVIPDILILPSDMKHFVKVISLGEG S EEQARC+CVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI
Subjt:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI

XP_038886670.1 LOW QUALITY PROTEIN: DNA polymerase alpha subunit B [Benincasa hispida]3.1e-4496.84Show/hide
Query:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI
        SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEG S EEQARCICVNPGRLAKGEGGGTFVELNYFGRPD+INASVVSI
Subjt:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI

TrEMBL top hitse value%identityAlignment
A0A0A0LQA4 DNA polymerase alpha subunit B7.3e-4494.74Show/hide
Query:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI
        SFYPLYPPAEGVPLDFSLAP+ALDISVIPDILILPSDMKHFVKVISLGEG S EEQARC+CVNPGRLAKGEGGGTFVELNYFGRPDQINA VVSI
Subjt:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI

A0A1S3BUF0 DNA polymerase alpha subunit B1.9e-4495.79Show/hide
Query:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI
        SFYPLYPPAEGVPLDFSLAP+ALDISVIPDILILPSDMKHFVKVISLGEG S EEQARC+CVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI
Subjt:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI

A0A5D3BJQ2 DNA polymerase alpha subunit B1.9e-4495.79Show/hide
Query:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI
        SFYPLYPPAEGVPLDFSLAP+ALDISVIPDILILPSDMKHFVKVISLGEG S EEQARC+CVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI
Subjt:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI

A0A6J1FZE8 DNA polymerase alpha subunit B2.6e-4189.47Show/hide
Query:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI
        SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEG + EE+A C+CVNPGRLAKGEGGGTFVEL YFG PD+INA+VVSI
Subjt:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI

A0A6J1HSI8 DNA polymerase alpha subunit B4.4e-4188.42Show/hide
Query:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI
        SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEG + EE+A C+CVNPGRLAKGEGGGTFVEL YFG PD++NA+VVSI
Subjt:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI

SwissProt top hitse value%identityAlignment
O89043 DNA polymerase alpha subunit B1.0e-1041.77Show/hide
Query:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVEL
        S+YPLYPP E + +D+        + V PD+ I+PS++++FVK I             C+C+NPGRL KG+ GGTF  L
Subjt:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVEL

P33611 DNA polymerase alpha subunit B4.6e-1143.04Show/hide
Query:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVEL
        S+YPLYPP E + +D+        + V PD+ I+PS++++FVK I             C+CVNPGRL KG+ GGTF  L
Subjt:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVEL

Q14181 DNA polymerase alpha subunit B4.9e-1345.88Show/hide
Query:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRP
        S+YPLYPP E + +D+        + V PD+LI+PS++++FVK + LG          C+CVNPGRL KG+ GGTF  L Y  RP
Subjt:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRP

Q58D13 DNA polymerase alpha subunit B5.5e-0443.18Show/hide
Query:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKV
        S+YPLYPP E + +D+        + V PD+ I PS++++FVKV
Subjt:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKV

Q9VB62 DNA polymerase alpha subunit B5.6e-0941.89Show/hide
Query:  SFYPLYPPA-EGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGG
        SFYPLYPPA E +  D  LA K   +  +P++LILPSD +HF+++++            C+ +NPGR+A  +GG
Subjt:  SFYPLYPPA-EGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGG

Arabidopsis top hitse value%identityAlignment
AT1G67630.1 DNA polymerase alpha 27.5e-3368.42Show/hide
Query:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI
        SFYPLYPP E +P D SLAPKAL IS IPDIL+LPSDM++FVK++SLGE    E+ A+C+CVNPGRLAKGEG GTFVEL Y G P+ ++AS++SI
Subjt:  SFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACAACAGCTTTTATCCTCTATACCCTCCAGCCGAAGGAGTTCCACTGGACTTTTCACTTGCTCCAAAAGCTCTCGACATCTCTGTAATACCTGATATTCTCATTCT
TCCATCCGACATGAAACACTTCGTGAAGGTTATATCCCTTGGTGAAGGAAGTTCAGGGGAAGAGCAAGCGAGATGCATATGTGTGAATCCTGGAAGATTGGCCAAGGGAG
AAGGAGGAGGTACTTTTGTAGAGCTTAATTACTTCGGTAGGCCTGACCAGATAAATGCTTCAGTTGTCAGCATATGA
mRNA sequenceShow/hide mRNA sequence
ATGCACAACAGCTTTTATCCTCTATACCCTCCAGCCGAAGGAGTTCCACTGGACTTTTCACTTGCTCCAAAAGCTCTCGACATCTCTGTAATACCTGATATTCTCATTCT
TCCATCCGACATGAAACACTTCGTGAAGGTTATATCCCTTGGTGAAGGAAGTTCAGGGGAAGAGCAAGCGAGATGCATATGTGTGAATCCTGGAAGATTGGCCAAGGGAG
AAGGAGGAGGTACTTTTGTAGAGCTTAATTACTTCGGTAGGCCTGACCAGATAAATGCTTCAGTTGTCAGCATATGA
Protein sequenceShow/hide protein sequence
MHNSFYPLYPPAEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI