; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10020642 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10020642
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionGTPase IMAP family member 1, putative
Genome locationChr05:1191120..1191599
RNA-Seq ExpressionHG10020642
SyntenyHG10020642
Gene Ontology termsGO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652531.1 hypothetical protein Csa_013077, partial [Cucumis sativus]8.8e-2567.01Show/hide
Query:  GGGQKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSIAVLLCFGFVGFAKMTKPIFQRVSKILYCVGGFLGVTAFFIANAIPY
        G  +  E AAEMVEEWK+MI+  CVSSAIGIATVSV I+T+LPN+FQ LSIAVLLCF  V FA+M   IF+ +SKILYCVGG L  ++ FIA AIPY
Subjt:  GGGQKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSIAVLLCFGFVGFAKMTKPIFQRVSKILYCVGGFLGVTAFFIANAIPY

KAF3947054.1 hypothetical protein CMV_026761 [Castanea mollissima]2.0e-0836.44Show/hide
Query:  GGGQKLEAAAEMV-------EEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSIAVLLCFGFVGFAKMTKPIFQRVSKILYCVGGFLGVTAFFIAN
        GG   +EAA  +V        +W E+++  C++SAI IA VSVQ++ +L  TF  LS+A+L  F     ++  K  F   +++L  +G F  VTAFF+A 
Subjt:  GGGQKLEAAAEMV-------EEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSIAVLLCFGFVGFAKMTKPIFQRVSKILYCVGGFLGVTAFFIAN

Query:  AIPYAPYFQFIIFLLYLI
         IP+  Y +F  + +Y I
Subjt:  AIPYAPYFQFIIFLLYLI

KAG6572911.1 hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia]3.3e-4066.88Show/hide
Query:  WVGNCIRKACSLWELLKN-EGGG------QKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSIAVLLCFGFVGFAKMTKPIFQRVS
        W  NCI KA  LWEL    EGGG      +   AAAEMVEEWK+MIVA CVSSAI IATVSVQIE KLP  F FLS+ +LLCFGFV F KMTK I +RVS
Subjt:  WVGNCIRKACSLWELLKN-EGGG------QKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSIAVLLCFGFVGFAKMTKPIFQRVS

Query:  KILYCVGGFLGVTAFFIANAIPYAPYFQFIIFLLYLIFCFISMLITTTHNPSSS
        +ILYCVGG LGVTA FIA+AIPYA YFQ IIFL+YLIF  + ML+   H  SSS
Subjt:  KILYCVGGFLGVTAFFIANAIPYAPYFQFIIFLLYLIFCFISMLITTTHNPSSS

KAG6584385.1 hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sororia]4.2e-1956.88Show/hide
Query:  AAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSIAVLLCFGFVGFAKMTKPIFQRVSKILYCVGGFLGVTAFFIANAIPYAPYFQFIIFL
        +A EM+ +W+ M+V  C+ +AI IATVSVQI+TKL   FQFLS A++ CF F   AK+ K   QRVS ILY +GGF  VTAFFIA AIPYA +FQ +   
Subjt:  AAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSIAVLLCFGFVGFAKMTKPIFQRVSKILYCVGGFLGVTAFFIANAIPYAPYFQFIIFL

Query:  LYLIFCFIS
        LYL+F FI+
Subjt:  LYLIFCFIS

KGN60003.2 hypothetical protein Csa_000735, partial [Cucumis sativus]1.4e-1762.79Show/hide
Query:  SLWELLKNEGGGQKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSIAVLLCFGFVGFAKMTKPIFQRVSKIL
        ++W      G  + LE  AEMVEE KEMI+  C+SSAIGIATVSVQ +TKLPN+FQFLSIAVL+CF  VGFA+M   IF+ +SKIL
Subjt:  SLWELLKNEGGGQKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSIAVLLCFGFVGFAKMTKPIFQRVSKIL

TrEMBL top hitse value%identityAlignment
A0A0A0LCY2 Uncharacterized protein9.4e-3360.54Show/hide
Query:  SLWELLKNEGGGQKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSIAVLLCFGFVGFAKMTKPIFQRVSKILYCVGGFLGVTAFFI
        ++W      G  + LE  AEMVEE KEMI+  C+SSAIGIATVSVQ +TKLPN+FQFLSIAVL+CF  VGFA+M   IF+ +SKILYC GGFL  T  FI
Subjt:  SLWELLKNEGGGQKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSIAVLLCFGFVGFAKMTKPIFQRVSKILYCVGGFLGVTAFFI

Query:  ANAIPYAPYFQFIIFLLYLIFCFI-SMLITTTHNPSSSTSTSSSTPL
        A AIPY  +F  I+ +LY IFC I  MLI+ THNP SS S+S + PL
Subjt:  ANAIPYAPYFQFIIFLLYLIFCFI-SMLITTTHNPSSSTSTSSSTPL

A0A0A0LQB6 Uncharacterized protein3.8e-5878.12Show/hide
Query:  RCWVGNCIRKACSLWELLKNE--------GGGQKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIET--KLPNTFQFLSIAVLLCFGFVGFAKMTKPI
        RCWVG+CIRKAC LWE LK E         GG+KL   AEMVEEWKEMIVALCVSSAIGIATVSVQIET  +LP TFQFLSI VLLCFGFVGFAKMTKPI
Subjt:  RCWVGNCIRKACSLWELLKNE--------GGGQKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIET--KLPNTFQFLSIAVLLCFGFVGFAKMTKPI

Query:  FQRVSKILYCVGGFLGVTAFFIANAIPYAPYFQFIIFLLYLIFCFISMLITTTHNPSSST
        F+ VSKILYCVGGFLGVTAFFIA AIP+APYFQ IIF+LYL+FCFI MLITT HN   S+
Subjt:  FQRVSKILYCVGGFLGVTAFFIANAIPYAPYFQFIIFLLYLIFCFISMLITTTHNPSSST

A0A0A0LQP5 Uncharacterized protein1.6e-2453.62Show/hide
Query:  GGGQKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSIAVLLCFGFVGFAKMTKPIFQRVSKILYCVGGFLGVTAFFIANAIPY-AP
        G  + LE  AE VEE KE I+ LCVSSAIGI T SVQI+TKLPN+FQ LS+ +LLCF  V FA+M + +F+ +S+ILYCVG F+  T  FIA AI Y   
Subjt:  GGGQKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSIAVLLCFGFVGFAKMTKPIFQRVSKILYCVGGFLGVTAFFIANAIPY-AP

Query:  YFQFIIFLLYLIFCFISML----ITTTHNPSSSTSTSS
        +F  I+ +LY IFC I ++    I+ THN  SS S+S+
Subjt:  YFQFIIFLLYLIFCFISML----ITTTHNPSSSTSTSS

A0A0A0LSX4 Uncharacterized protein6.6e-2661.82Show/hide
Query:  SLWELLKNEGGGQKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSIAVLLCFGFVGFAKMTKPIFQRVSKILYCVGGFLGVTAFFI
        ++W      G  +  E AAEMVEEWK+MI+  CVSSAIGIATVSV I+T+LPN+FQ LSIAVLLCF  V FA+M   IF+ +SKILYCVGG L  ++ FI
Subjt:  SLWELLKNEGGGQKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSIAVLLCFGFVGFAKMTKPIFQRVSKILYCVGGFLGVTAFFI

Query:  ANAIPYAPYF
        A AIPYA  F
Subjt:  ANAIPYAPYF

A0A7N2R866 Uncharacterized protein9.2e-1241.23Show/hide
Query:  GGQKLEAAAEMV----EEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSIAVLLCFGFVGFAKMTKPIFQRVSKILYCVGGFLGVTAFFIANAIPY
        G +K   AA +V     EW E+++A C++SA+ IA +SVQ+ T+LP  F   S+A+LL F  V  +K   P F R +++L   G F  VTAFFIA  IP+
Subjt:  GGQKLEAAAEMV----EEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSIAVLLCFGFVGFAKMTKPIFQRVSKILYCVGGFLGVTAFFIANAIPY

Query:  APYFQFIIFLLYLI
          Y +F  +++Y I
Subjt:  APYFQFIIFLLYLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTTGTTGGGTTGGGAATTGCATTAGAAAGGCATGTAGTTTATGGGAATTATTAAAGAATGAAGGCGGCGGCCAGAAGCTGGAGGCGGCGGCGGAAATGGTGGAGGA
ATGGAAGGAAATGATAGTAGCATTGTGCGTGTCATCAGCAATAGGGATAGCAACAGTGTCTGTTCAAATAGAAACAAAACTGCCCAATACATTTCAGTTTCTATCAATTG
CTGTGTTGCTGTGTTTTGGGTTTGTGGGTTTTGCAAAAATGACGAAACCCATTTTCCAAAGAGTTTCAAAGATATTGTATTGTGTGGGAGGGTTTTTGGGGGTCACAGCC
TTTTTCATAGCCAATGCAATTCCATATGCCCCATATTTTCAGTTCATCATTTTCCTCCTTTACTTGATCTTTTGCTTCATTTCCATGCTCATCACCACCACCCACAACCC
TTCTTCTTCTACTTCTACTTCTTCTTCCACTCCCCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGTTGTTGGGTTGGGAATTGCATTAGAAAGGCATGTAGTTTATGGGAATTATTAAAGAATGAAGGCGGCGGCCAGAAGCTGGAGGCGGCGGCGGAAATGGTGGAGGA
ATGGAAGGAAATGATAGTAGCATTGTGCGTGTCATCAGCAATAGGGATAGCAACAGTGTCTGTTCAAATAGAAACAAAACTGCCCAATACATTTCAGTTTCTATCAATTG
CTGTGTTGCTGTGTTTTGGGTTTGTGGGTTTTGCAAAAATGACGAAACCCATTTTCCAAAGAGTTTCAAAGATATTGTATTGTGTGGGAGGGTTTTTGGGGGTCACAGCC
TTTTTCATAGCCAATGCAATTCCATATGCCCCATATTTTCAGTTCATCATTTTCCTCCTTTACTTGATCTTTTGCTTCATTTCCATGCTCATCACCACCACCCACAACCC
TTCTTCTTCTACTTCTACTTCTTCTTCCACTCCCCTTTGA
Protein sequenceShow/hide protein sequence
MRCWVGNCIRKACSLWELLKNEGGGQKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSIAVLLCFGFVGFAKMTKPIFQRVSKILYCVGGFLGVTA
FFIANAIPYAPYFQFIIFLLYLIFCFISMLITTTHNPSSSTSTSSSTPL