; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10020662 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10020662
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionATP-dependent Clp protease adapter protein ClpS
Genome locationChr05:1356086..1356548
RNA-Seq ExpressionHG10020662
SyntenyHG10020662
Gene Ontology termsGO:1903052 - positive regulation of proteolysis involved in cellular protein catabolic process (biological process)
GO:0008233 - peptidase activity (molecular function)
GO:0030674 - protein binding, bridging (molecular function)
InterPro domainsIPR003769 - Adaptor protein ClpS, core
IPR014719 - Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
IPR022935 - ATP-dependent Clp protease adaptor protein ClpS


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ98982.1 ATP-dependent Clp protease adapter protein CLPS1 [Cucumis melo var. makuwa]1.4e-5997.5Show/hide
Query:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH
        MM+SVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH
Subjt:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH

Query:  CMQLRGNGLLSSIEPASDGC
        CMQLRGNGLLSSIEPASDGC
Subjt:  CMQLRGNGLLSSIEPASDGC

XP_008456997.1 PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucumis melo]1.4e-5997.5Show/hide
Query:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH
        MM+SVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH
Subjt:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH

Query:  CMQLRGNGLLSSIEPASDGC
        CMQLRGNGLLSSIEPASDGC
Subjt:  CMQLRGNGLLSSIEPASDGC

XP_022136971.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Momordica charantia]1.4e-5997.5Show/hide
Query:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH
        MMLSVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKT+PPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGM+VVIICAQVDAEDH
Subjt:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH

Query:  CMQLRGNGLLSSIEPASDGC
        CMQLRGNGLLSSIEPASDGC
Subjt:  CMQLRGNGLLSSIEPASDGC

XP_022136972.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 [Momordica charantia]1.4e-5997.5Show/hide
Query:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH
        MMLSVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKT+PPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGM+VVIICAQVDAEDH
Subjt:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH

Query:  CMQLRGNGLLSSIEPASDGC
        CMQLRGNGLLSSIEPASDGC
Subjt:  CMQLRGNGLLSSIEPASDGC

XP_038894047.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida]1.4e-5998.33Show/hide
Query:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH
        MMLSVAELG+GGGLLEKPTIEKTTPGRESEFDVRK RKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH
Subjt:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH

Query:  CMQLRGNGLLSSIEPASDGC
        CMQLRGNGLLSSIEPASDGC
Subjt:  CMQLRGNGLLSSIEPASDGC

TrEMBL top hitse value%identityAlignment
A0A0A0LSY6 ClpS domain-containing protein2.6e-5996.67Show/hide
Query:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH
        MM+SVAELG+GGGLLEKP IEKTTPGRESEFDVRKSRKTSPPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH
Subjt:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH

Query:  CMQLRGNGLLSSIEPASDGC
        CMQLRGNGLLSSIEPASDGC
Subjt:  CMQLRGNGLLSSIEPASDGC

A0A1S3C561 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like6.8e-6097.5Show/hide
Query:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH
        MM+SVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH
Subjt:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH

Query:  CMQLRGNGLLSSIEPASDGC
        CMQLRGNGLLSSIEPASDGC
Subjt:  CMQLRGNGLLSSIEPASDGC

A0A5D3BGU1 ATP-dependent Clp protease adapter protein CLPS16.8e-6097.5Show/hide
Query:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH
        MM+SVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH
Subjt:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH

Query:  CMQLRGNGLLSSIEPASDGC
        CMQLRGNGLLSSIEPASDGC
Subjt:  CMQLRGNGLLSSIEPASDGC

A0A6J1C511 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X16.8e-6097.5Show/hide
Query:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH
        MMLSVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKT+PPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGM+VVIICAQVDAEDH
Subjt:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH

Query:  CMQLRGNGLLSSIEPASDGC
        CMQLRGNGLLSSIEPASDGC
Subjt:  CMQLRGNGLLSSIEPASDGC

A0A6J1C6X4 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X26.8e-6097.5Show/hide
Query:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH
        MMLSVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKT+PPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGM+VVIICAQVDAEDH
Subjt:  MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDH

Query:  CMQLRGNGLLSSIEPASDGC
        CMQLRGNGLLSSIEPASDGC
Subjt:  CMQLRGNGLLSSIEPASDGC

SwissProt top hitse value%identityAlignment
A0A2K3CNL6 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic1.4e-2253.21Show/hide
Query:  GGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLS
        GG+++ PT   TT  ++    V +S+K  P Y+VLLHNDNYNKREYVV+VL+KV+  +T+D+AV  MQEAH  G+A+V+ C Q +AE +C  LR NGL S
Subjt:  GGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLS

Query:  SIEPASDGC
        +IEP   GC
Subjt:  SIEPASDGC

Q31QE7 ATP-dependent Clp protease adapter protein ClpS6.2e-1856.96Show/hide
Query:  RKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEP
        RK +P YRVLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    AE +C QL+ +GL SSIEP
Subjt:  RKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEP

Q3AUR5 ATP-dependent Clp protease adapter protein ClpS9.3e-1443.14Show/hide
Query:  EKPTIEKTTPGRESEFD--VRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSI
        E PT    +PG  +  D    + RK SP Y+VLLHND  N  EYV+  L +V+P ++  +A+ +M EAH  G+ +VI+C    AE +C  L+  GL SSI
Subjt:  EKPTIEKTTPGRESEFD--VRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSI

Query:  EP
        EP
Subjt:  EP

Q5N3U1 ATP-dependent Clp protease adapter protein ClpS2.9e-1554.79Show/hide
Query:  RKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGL
        RK +P YRVLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    AE +C QL+ +GL
Subjt:  RKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGL

Q9SX29 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic4.3e-5181.74Show/hide
Query:  AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR
        A LG+GGG+L+KP IEKTTPGRESEFD+RKS+K +PPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH NG+AVVI+CAQ DAE HCMQLR
Subjt:  AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR

Query:  GNGLLSSIEPASDGC
        GNGLLSS+EP   GC
Subjt:  GNGLLSSIEPASDGC

Arabidopsis top hitse value%identityAlignment
AT1G68660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein3.0e-5281.74Show/hide
Query:  AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR
        A LG+GGG+L+KP IEKTTPGRESEFD+RKS+K +PPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH NG+AVVI+CAQ DAE HCMQLR
Subjt:  AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR

Query:  GNGLLSSIEPASDGC
        GNGLLSS+EP   GC
Subjt:  GNGLLSSIEPASDGC

AT1G68660.2 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein1.7e-3159.13Show/hide
Query:  AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR
        A LG+GGG+L+KP IEKTTPGRESEFD+RKS+K +PPYRV+LHNDN+NKREYVVQVLMK                               DAE HCMQLR
Subjt:  AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR

Query:  GNGLLSSIEPASDGC
        GNGLLSS+EP   GC
Subjt:  GNGLLSSIEPASDGC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTTATCAGTTGCTGAGCTTGGAAGGGGTGGGGGGTTGTTGGAGAAGCCAACAATAGAGAAGACAACACCTGGCCGTGAATCTGAGTTTGATGTTAGGAAATCAAG
GAAAACTTCTCCACCTTATCGAGTGTTGCTACATAACGACAATTACAACAAGCGGGAATACGTTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCCTTGACAATG
CAGTCAACATAATGCAGGAGGCACATTACAATGGGATGGCAGTGGTAATTATCTGCGCTCAAGTGGATGCAGAAGATCACTGCATGCAGCTGAGAGGCAATGGTCTTCTA
AGTTCAATCGAGCCTGCAAGTGATGGTTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGTTATCAGTTGCTGAGCTTGGAAGGGGTGGGGGGTTGTTGGAGAAGCCAACAATAGAGAAGACAACACCTGGCCGTGAATCTGAGTTTGATGTTAGGAAATCAAG
GAAAACTTCTCCACCTTATCGAGTGTTGCTACATAACGACAATTACAACAAGCGGGAATACGTTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCCTTGACAATG
CAGTCAACATAATGCAGGAGGCACATTACAATGGGATGGCAGTGGTAATTATCTGCGCTCAAGTGGATGCAGAAGATCACTGCATGCAGCTGAGAGGCAATGGTCTTCTA
AGTTCAATCGAGCCTGCAAGTGATGGTTGTTGA
Protein sequenceShow/hide protein sequence
MMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLL
SSIEPASDGC