CuGenDBv2

Gene ID	HG10020702
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Reticulon-like protein
Genome location	Chr05:1662891..1665332
RNA-Seq Expression	HG10020702
Synteny	HG10020702
Gene Ontology terms	GO:0009617 - response to bacterium (biological process) GO:0005789 - endoplasmic reticulum membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR003388 - Reticulon IPR045064 - Reticulon-like protein, plant

Homology

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GenBank top hits

e value

%identity

Alignment

TYJ99012.1 reticulon-like protein B9 [Cucumis melo var. makuwa]

8.3e-25

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Query:  MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGK--------------------------------------------------------------------
        MS+YSDSDDDSVP SKLFGRRRPIH+IFGGG+                                                                    
Subjt:  MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGK--------------------------------------------------------------------

Query:  ------------------------------------------------------GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIP
                                                              GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIP
Subjt:  ------------------------------------------------------GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIP

Query:  RGPVKDKKLR
        RGPVKDKKLR
Subjt:  RGPVKDKKLR

XP_004137485.1 reticulon-like protein B9 [Cucumis sativus]

7.3e-21

36.07

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Query:  MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGK--------------------------------------------------------------------
        MS+YSDSDDDSVP SKLFGRRRP+++IFGGG+                                                                    
Subjt:  MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGK--------------------------------------------------------------------

Query:  ---------------------------------------------------------------GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNF
                                                                       GFVALETLPFLYEKYEEEVDQ AG AI QTKKSYRNF
Subjt:  ---------------------------------------------------------------GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNF

Query:  DAKFLNKIPRGPVKDKKLR
        DAKFLNKIPRGPVKDKKLR
Subjt:  DAKFLNKIPRGPVKDKKLR

XP_008461104.1 PREDICTED: reticulon-like protein B9 [Cucumis melo]

9.2e-24

38.36

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Query:  MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGK--------------------------------------------------------------------
        MS+YSDSDDDSVP SKLFGRRRPIH+IFGGG+                                                                    
Subjt:  MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGK--------------------------------------------------------------------

Query:  ---------------------------------------------------------------GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNF
                                                                       GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNF
Subjt:  ---------------------------------------------------------------GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNF

Query:  DAKFLNKIPRGPVKDKKLR
        DAKFLNKIPRGPVKDKKLR
Subjt:  DAKFLNKIPRGPVKDKKLR

XP_022137519.1 reticulon-like protein B9 [Momordica charantia]

3.6e-20

91.07

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Query:  GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDKKLR
        GFVA+ETLPFLYEKYEEEVD FAGKAI QTKKSYRNFD+KFLNKIPRGPVKDKK+R
Subjt:  GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDKKLR

XP_038895119.1 reticulon-like protein B9 [Benincasa hispida]

1.3e-25

39.73

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Query:  MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGK--------------------------------------------------------------------
        MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGG+                                                                    
Subjt:  MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGK--------------------------------------------------------------------

Query:  ---------------------------------------------------------------GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNF
                                                                       GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNF
Subjt:  ---------------------------------------------------------------GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNF

Query:  DAKFLNKIPRGPVKDKKLR
        DAKFLNKIPRGPVKDKKLR
Subjt:  DAKFLNKIPRGPVKDKKLR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LTQ2 Reticulon-like protein

3.5e-21

36.07

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Query:  MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGK--------------------------------------------------------------------
        MS+YSDSDDDSVP SKLFGRRRP+++IFGGG+                                                                    
Subjt:  MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGK--------------------------------------------------------------------

Query:  ---------------------------------------------------------------GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNF
                                                                       GFVALETLPFLYEKYEEEVDQ AG AI QTKKSYRNF
Subjt:  ---------------------------------------------------------------GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNF

Query:  DAKFLNKIPRGPVKDKKLR
        DAKFLNKIPRGPVKDKKLR
Subjt:  DAKFLNKIPRGPVKDKKLR

A0A1S3CEE6 Reticulon-like protein

4.4e-24

38.36

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Query:  MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGK--------------------------------------------------------------------
        MS+YSDSDDDSVP SKLFGRRRPIH+IFGGG+                                                                    
Subjt:  MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGK--------------------------------------------------------------------

Query:  ---------------------------------------------------------------GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNF
                                                                       GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNF
Subjt:  ---------------------------------------------------------------GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNF

Query:  DAKFLNKIPRGPVKDKKLR
        DAKFLNKIPRGPVKDKKLR
Subjt:  DAKFLNKIPRGPVKDKKLR

A0A5D3BGX3 Reticulon-like protein

4.0e-25

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Query:  MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGK--------------------------------------------------------------------
        MS+YSDSDDDSVP SKLFGRRRPIH+IFGGG+                                                                    
Subjt:  MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGK--------------------------------------------------------------------

Query:  ------------------------------------------------------GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIP
                                                              GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIP
Subjt:  ------------------------------------------------------GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIP

Query:  RGPVKDKKLR
        RGPVKDKKLR
Subjt:  RGPVKDKKLR

A0A6J1C7F6 Reticulon-like protein

1.7e-20

91.07

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Query:  GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDKKLR
        GFVA+ETLPFLYEKYEEEVD FAGKAI QTKKSYRNFD+KFLNKIPRGPVKDKK+R
Subjt:  GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDKKLR

A0A6J1K5V9 Reticulon-like protein

2.3e-20

35.62

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Query:  MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGK--------------------------------------------------------------------
        MSTY+DSDDDS  PSKLFGRRRP+HEI GGGK                                                                    
Subjt:  MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGK--------------------------------------------------------------------

Query:  ---------------------------------------------------------------GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNF
                                                                       GFVALETLPFLY KYEEEVD  AGKAI  TKKSYRNF
Subjt:  ---------------------------------------------------------------GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNF

Query:  DAKFLNKIPRGPVKDKKLR
        DAKFLNKIPRGPVKDKKLR
Subjt:  DAKFLNKIPRGPVKDKKLR

SwissProt top hits

e value

%identity

Alignment

O82352 Reticulon-like protein B5

1.4e-06

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Query:  FVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDK
        FV L T+P LYEK+E++VD  A KA+ + +K Y  FD K L+KIP   +K K
Subjt:  FVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDK

Q9LJQ5 Reticulon-like protein B9

4.6e-10

53.7

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Query:  GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDKK
        GFV+++TLP +YE YE++VD  AGK + + KK Y+  D   L+KIPRG VK+KK
Subjt:  GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDKK

Q9M145 Reticulon-like protein B7

1.9e-08

57.78

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Query:  FVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIP
        FV + T+P LYEKYE+E+D  A KA+ + KK Y+ F+AKFL+KIP
Subjt:  FVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIP

Q9SUR3 Reticulon-like protein B1

4.7e-07

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Query:  VALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDKK
        V L T+P  Y+KYE++VD    KA+ + KK Y   D K L+KIP GP+K+KK
Subjt:  VALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDKK

Q9SUT9 Reticulon-like protein B2

1.7e-09

53.85

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Query:  VALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDKK
        V L T+P  Y+KYE++VD +  KA+++ KK Y   DAK  +KIPRGP+KDKK
Subjt:  VALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDKK

Arabidopsis top hits

e value

%identity

Alignment

AT2G46170.1 Reticulon family protein

9.8e-08

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Query:  FVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDK
        FV L T+P LYEK+E++VD  A KA+ + +K Y  FD K L+KIP   +K K
Subjt:  FVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDK

AT3G18260.1 Reticulon family protein

3.3e-11

53.7

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Query:  GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDKK
        GFV+++TLP +YE YE++VD  AGK + + KK Y+  D   L+KIPRG VK+KK
Subjt:  GFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDKK

AT4G01230.1 Reticulon family protein

1.4e-09

57.78

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Query:  FVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIP
        FV + T+P LYEKYE+E+D  A KA+ + KK Y+ F+AKFL+KIP
Subjt:  FVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIP

AT4G11220.1 VIRB2-interacting protein 2

1.2e-10

53.85

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Query:  VALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDKK
        V L T+P  Y+KYE++VD +  KA+++ KK Y   DAK  +KIPRGP+KDKK
Subjt:  VALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDKK

AT4G23630.1 VIRB2-interacting protein 1

3.4e-08

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Query:  VALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDKK
        V L T+P  Y+KYE++VD    KA+ + KK Y   D K L+KIP GP+K+KK
Subjt:  VALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDKK

Sequences

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CDS sequence

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ATGTCGACCTACTCCGACTCCGACGATGATTCGGTACCTCCGTCAAAGCTCTTCGGACGCCGCCGCCCCATTCACGAAATATTTGGAGGAGGGAAAGGGTTTGTAGCATT
GGAAACTCTGCCATTTCTATATGAAAAATATGAAGAAGAGGTTGATCAGTTTGCTGGGAAGGCCATTTCTCAAACCAAGAAATCTTACAGAAATTTCGATGCCAAATTCC
TCAACAAGATCCCAAGAGGACCTGTCAAAGACAAGAAACTCAGATAA

mRNA sequence

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Protein sequence

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MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGKGFVALETLPFLYEKYEEEVDQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDKKLR

HG10020702 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome