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HG10020708 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10020708
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPUM-HD domain-containing protein
Genome locationChr05:1712475..1713595
RNA-Seq ExpressionHG10020708
SyntenyHG10020708
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600040.1 Pumilio-like 2, partial [Cucurbita argyrosperma subsp. sororia]9.5e-1556.07Show/hide
Query:  SGNLPPLYENAAAASAMGMSG--IRAFSGLALGSN-----------------------------------LGSNEF----AAAQVAGISDPPLNGESLMG
        SGNLPPLYENAAAASAMGMSG   RAFSGLALGSN                                   LGSN++    AAAQVAGISDPPL+GESLMG
Subjt:  SGNLPPLYENAAAASAMGMSG--IRAFSGLALGSN-----------------------------------LGSNEF----AAAQVAGISDPPLNGESLMG

Query:  NGYKDVL
        NGY D+L
Subjt:  NGYKDVL

KAG7030709.1 Pumilio-like 2, partial [Cucurbita argyrosperma subsp. argyrosperma]7.3e-1555.56Show/hide
Query:  SGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN-----------------------------------LGSNEF-----AAAQVAGISDPPLNGESLM
        SGNLPPLYENAAAASAMGMSG+  RAFSGLALGSN                                   LGSN++     AAAQVAGISDPPL+GESLM
Subjt:  SGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN-----------------------------------LGSNEF-----AAAQVAGISDPPLNGESLM

Query:  GNGYKDVL
        GNGY D+L
Subjt:  GNGYKDVL

XP_022994967.1 pumilio homolog 1-like isoform X2 [Cucurbita maxima]1.2e-1455.14Show/hide
Query:  SGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN-----------------------------------LGSNEF----AAAQVAGISDPPLNGESLMG
        SGNLPPLYENAAAASA+GMSG+  RAFSGLALGSN                                   LGSN++    AAAQVAGISDPPL+GESLMG
Subjt:  SGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN-----------------------------------LGSNEF----AAAQVAGISDPPLNGESLMG

Query:  NGYKDVL
        NGY D+L
Subjt:  NGYKDVL

XP_023529763.1 pumilio homolog 1-like [Cucurbita pepo subsp. pepo]7.3e-1555.56Show/hide
Query:  SGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN-----------------------------------LGSNEF-----AAAQVAGISDPPLNGESLM
        SGNLPPLYENAAAASAMGMSG+  RAFSGLALGSN                                   LGSN++     AAAQVAGISDPPL+GESLM
Subjt:  SGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN-----------------------------------LGSNEF-----AAAQVAGISDPPLNGESLM

Query:  GNGYKDVL
        GNGY D+L
Subjt:  GNGYKDVL

XP_038889881.1 pumilio homolog 1-like [Benincasa hispida]3.0e-1654.55Show/hide
Query:  LLGPISDSGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN-----------------------------------LGSNEFAAAQVAGISDPPLNGES
        ++G    SGNLPPLYENAAAASAMGMSG+  RAF+GLALGS+                                   LGSNE+AAAQVAGISDPPL+GES
Subjt:  LLGPISDSGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN-----------------------------------LGSNEFAAAQVAGISDPPLNGES

Query:  LMGNGYKDVL
        LMGNGY D+L
Subjt:  LMGNGYKDVL

TrEMBL top hitse value%identityAlignment
A0A0A0KQA7 PUM-HD domain-containing protein1.8e-1450.91Show/hide
Query:  LLGPISDSGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN-----------------------------------LGSNEFAAAQVAGISDPPLNGES
        ++G    SGNLPPLYENAAAASAMGMS +  RAF+GLALGS+                                   LGSNE+AAAQV GISDPPL+ +S
Subjt:  LLGPISDSGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN-----------------------------------LGSNEFAAAQVAGISDPPLNGES

Query:  LMGNGYKDVL
        LMGNGY D+L
Subjt:  LMGNGYKDVL

A0A6J1FLT6 pumilio homolog 1-like1.3e-1455.14Show/hide
Query:  SGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN-----------------------------------LGSNEF----AAAQVAGISDPPLNGESLMG
        SGNLPPLYENAAAASAMGMSG+  RAFSGLALGS                                    LGSN++    AAAQVAGISDPPL+GESLMG
Subjt:  SGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN-----------------------------------LGSNEF----AAAQVAGISDPPLNGESLMG

Query:  NGYKDVL
        NGY D+L
Subjt:  NGYKDVL

A0A6J1GX38 pumilio homolog 1-like1.3e-1450Show/hide
Query:  LLGPISDSGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN-----------------------------------LGSNEFAAAQVAGISDPPLNGES
        ++G    SGNLPPLYENAAAASAMGM+G+  R F+GLALGS+                                   LGSNE+AAAQV G++DPPL+GES
Subjt:  LLGPISDSGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN-----------------------------------LGSNEFAAAQVAGISDPPLNGES

Query:  LMGNGYKDVL
        LMGNGY D+L
Subjt:  LMGNGYKDVL

A0A6J1JXE0 pumilio homolog 1-like isoform X16.0e-1555.14Show/hide
Query:  SGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN-----------------------------------LGSNEF----AAAQVAGISDPPLNGESLMG
        SGNLPPLYENAAAASA+GMSG+  RAFSGLALGSN                                   LGSN++    AAAQVAGISDPPL+GESLMG
Subjt:  SGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN-----------------------------------LGSNEF----AAAQVAGISDPPLNGESLMG

Query:  NGYKDVL
        NGY D+L
Subjt:  NGYKDVL

A0A6J1JXE6 pumilio homolog 1-like isoform X26.0e-1555.14Show/hide
Query:  SGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN-----------------------------------LGSNEF----AAAQVAGISDPPLNGESLMG
        SGNLPPLYENAAAASA+GMSG+  RAFSGLALGSN                                   LGSN++    AAAQVAGISDPPL+GESLMG
Subjt:  SGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN-----------------------------------LGSNEF----AAAQVAGISDPPLNGESLMG

Query:  NGYKDVL
        NGY D+L
Subjt:  NGYKDVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCAGTGGCTATACTACTAGTCCTCCAGTTTCCTCAATTGTTGGGACCCATCTCAGACAGTGGTAATTTACCTCCGCTGTATGAGAATGCTGCTGCTGCATCAGC
AATGGGAATGAGCGGCATAAGAGCATTCAGTGGATTGGCTTTAGGATCGAATTTGGGATCAAATGAATTTGCTGCTGCACAGGTGGCCGGGATTAGTGACCCTCCATTGA
ATGGCGAAAGTTTGATGGGTAATGGATATAAGGATGTATTGGAAAATCACAATTTGTTCTACCTTATTTTGAAACTCCATTCTTTCTTTGGATCAATTAAGTTGACTAAG
GTTGTGGCCCTCCATGATGCCATCTCCAAGGTTGTCGAGGCTGGTACCAACCATTTTGGGTCGAGATTAACTCAAAGATCCTTTGGAACCTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCAGTGGCTATACTACTAGTCCTCCAGTTTCCTCAATTGTTGGGACCCATCTCAGACAGTGGTAATTTACCTCCGCTGTATGAGAATGCTGCTGCTGCATCAGC
AATGGGAATGAGCGGCATAAGAGCATTCAGTGGATTGGCTTTAGGATCGAATTTGGGATCAAATGAATTTGCTGCTGCACAGGTGGCCGGGATTAGTGACCCTCCATTGA
ATGGCGAAAGTTTGATGGGTAATGGATATAAGGATGTATTGGAAAATCACAATTTGTTCTACCTTATTTTGAAACTCCATTCTTTCTTTGGATCAATTAAGTTGACTAAG
GTTGTGGCCCTCCATGATGCCATCTCCAAGGTTGTCGAGGCTGGTACCAACCATTTTGGGTCGAGATTAACTCAAAGATCCTTTGGAACCTTCTGA
Protein sequenceShow/hide protein sequence
MDSVAILLVLQFPQLLGPISDSGNLPPLYENAAAASAMGMSGIRAFSGLALGSNLGSNEFAAAQVAGISDPPLNGESLMGNGYKDVLENHNLFYLILKLHSFFGSIKLTK
VVALHDAISKVVEAGTNHFGSRLTQRSFGTF