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HG10020709 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10020709
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionpumilio homolog 1-like
Genome locationChr05:1713833..1714593
RNA-Seq ExpressionHG10020709
SyntenyHG10020709
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600040.1 Pumilio-like 2, partial [Cucurbita argyrosperma subsp. sororia]7.2e-0684.85Show/hide
Query:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
        +SRRV GDWT DGLIGLPGLGLG+RK SIAEIL
Subjt:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
KAG7030709.1 Pumilio-like 2, partial [Cucurbita argyrosperma subsp. argyrosperma]7.2e-0684.85Show/hide
Query:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
        +SRRV GDWT DGLIGLPGLGLG+RK SIAEIL
Subjt:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
XP_008461691.1 PREDICTED: pumilio homolog 1-like [Cucumis melo]2.5e-0687.88Show/hide
Query:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
        +SRRVAGDWT DGLIGLPGLGLG+RK SIAEIL
Subjt:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
XP_022138997.1 pumilio homolog 1-like [Momordica charantia]2.5e-0687.88Show/hide
Query:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
        +SRRVAGDWT DGLIGLPGLGLG+RK SIAEIL
Subjt:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
XP_022994967.1 pumilio homolog 1-like isoform X2 [Cucurbita maxima]7.2e-0684.85Show/hide
Query:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
        +SRRV GDWT DGLIGLPGLGLG+RK SIAEIL
Subjt:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
TrEMBL top hitse value%identityAlignment
A0A1S3CFB3 pumilio homolog 1-like1.2e-0687.88Show/hide
Query:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
        +SRRVAGDWT DGLIGLPGLGLG+RK SIAEIL
Subjt:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
A0A5D3BVQ2 Pumilio-like protein 1-like1.2e-0687.88Show/hide
Query:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
        +SRRVAGDWT DGLIGLPGLGLG+RK SIAEIL
Subjt:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
A0A6J1CCS5 pumilio homolog 1-like1.2e-0687.88Show/hide
Query:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
        +SRRVAGDWT DGLIGLPGLGLG+RK SIAEIL
Subjt:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
A0A6J1JXE0 pumilio homolog 1-like isoform X13.5e-0684.85Show/hide
Query:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
        +SRRV GDWT DGLIGLPGLGLG+RK SIAEIL
Subjt:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
A0A6J1JXE6 pumilio homolog 1-like isoform X23.5e-0684.85Show/hide
Query:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
        +SRRV GDWT DGLIGLPGLGLG+RK SIAEIL
Subjt:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEIL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G29200.1 pumilio 17.2e-0447.37Show/hide
Query:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEILSMVIG
        K+   A +W  +GLIGLPGLGLG ++ S A+I    +G
Subjt:  KSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEILSMVIG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGCTTCTTTCTCCAATTGGGTTTGCTTTCGGCTTCTCACCGCGTTCTTCCTAGCACCTACATTAGATGATCAAACATTGAAAATTGAAAACAAGAAGAAGCAAAT
GCAGCAAAATGGGAAGATGGATTACCAATGGATGACATGCCTGGAGTTGGAGCCAGAGAGGATTCCACTATCGAAATCAAGGCGGGTTGCTGGTGATTGGACCGATGATG
GCCTTATCGGGCTGCCGGGGTTGGGACTTGGGAATAGGAAGACTAGCATTGCAGAGATCCTTTCAATGGTGATTGGACAGGTGGTGGGAGGATATCTAGAACTATGGATA
AAAGAAGTGCCTCTGGTCCAAATTCTTTCAATGGCCCTTCAGACATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGCTTCTTTCTCCAATTGGGTTTGCTTTCGGCTTCTCACCGCGTTCTTCCTAGCACCTACATTAGATGATCAAACATTGAAAATTGAAAACAAGAAGAAGCAAAT
GCAGCAAAATGGGAAGATGGATTACCAATGGATGACATGCCTGGAGTTGGAGCCAGAGAGGATTCCACTATCGAAATCAAGGCGGGTTGCTGGTGATTGGACCGATGATG
GCCTTATCGGGCTGCCGGGGTTGGGACTTGGGAATAGGAAGACTAGCATTGCAGAGATCCTTTCAATGGTGATTGGACAGGTGGTGGGAGGATATCTAGAACTATGGATA
AAAGAAGTGCCTCTGGTCCAAATTCTTTCAATGGCCCTTCAGACATGA
Protein sequenceShow/hide protein sequence
MQASFSNWVCFRLLTAFFLAPTLDDQTLKIENKKKQMQQNGKMDYQWMTCLELEPERIPLSKSRRVAGDWTDDGLIGLPGLGLGNRKTSIAEILSMVIGQVVGGYLELWI
KEVPLVQILSMALQT