; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10020728 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10020728
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDown syndrome critical region protein 3 homolog isoform X1
Genome locationChr05:1922596..1922826
RNA-Seq ExpressionHG10020728
SyntenyHG10020728
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0042147 - retrograde transport, endosome to Golgi (biological process)
GO:0048768 - root hair cell tip growth (biological process)
GO:0005829 - cytosol (cellular component)
GO:0010008 - endosome membrane (cellular component)
GO:0030904 - retromer complex (cellular component)
InterPro domainsIPR014752 - Arrestin-like, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137506.1 vacuolar protein sorting-associated protein 26C [Cucumis sativus]2.5e-15100Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
        VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
XP_008464938.1 PREDICTED: Down syndrome critical region protein 3 homolog isoform X1 [Cucumis melo]1.6e-1495.74Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
        VELKLSRTNRIYRP EHLQGQIIVNSRSSISHSGIR+ALNGSVNLQV
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
XP_022137704.1 Down syndrome critical region protein 3 homolog isoform X1 [Momordica charantia]4.3e-1591.84Show/hide
Query:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
        MPVEL+LSRTNRIYRPSEHLQGQIIVNS SSISHSGIRLA+NGSVNLQ+
Subjt:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
XP_022137705.1 Down syndrome critical region protein 3 homolog isoform X2 [Momordica charantia]4.3e-1591.84Show/hide
Query:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
        MPVEL+LSRTNRIYRPSEHLQGQIIVNS SSISHSGIRLA+NGSVNLQ+
Subjt:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
XP_038895697.1 vacuolar protein sorting-associated protein 26C isoform X1 [Benincasa hispida]3.9e-1697.96Show/hide
Query:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
        MPVELKLSRTNRIYRPSEHLQG IIVNSRSSISHSGIRLALNGSVNLQV
Subjt:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
TrEMBL top hitse value%identityAlignment
A0A0A0LT45 Uncharacterized protein1.2e-15100Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
        VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
A0A1S3CPJ5 Down syndrome critical region protein 3 homolog isoform X38.0e-1595.74Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
        VELKLSRTNRIYRP EHLQGQIIVNSRSSISHSGIR+ALNGSVNLQV
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
A0A5D3BIU2 Down syndrome critical region protein 3-like protein isoform X18.0e-1595.74Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
        VELKLSRTNRIYRP EHLQGQIIVNSRSSISHSGIR+ALNGSVNLQV
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
A0A6J1C7E9 Down syndrome critical region protein 3 homolog isoform X22.1e-1591.84Show/hide
Query:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
        MPVEL+LSRTNRIYRPSEHLQGQIIVNS SSISHSGIRLA+NGSVNLQ+
Subjt:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
A0A6J1C810 Down syndrome critical region protein 3 homolog isoform X12.1e-1591.84Show/hide
Query:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
        MPVEL+LSRTNRIYRPSEHLQGQIIVNS SSISHSGIRLA+NGSVNLQ+
Subjt:  MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
SwissProt top hitse value%identityAlignment
O14972 Vacuolar protein sorting-associated protein 26C3.2e-0536.17Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
        +++K+ R N++Y   E L G ++++S+ S+ H G+ L + G+VNLQ+
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
O35075 Vacuolar protein sorting-associated protein 26C2.5e-0536.17Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
        +++K+ R N++Y   E L G ++++S+ S+ H G+ L + G+VNLQ+
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
Q54DI8 Vacuolar protein sorting-associated protein 26C1.4e-0538.3Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
        ++LKL + ++IYRP   + G +++NS+  +SHSG+ + + G+V LQ+
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
Q5RF33 Vacuolar protein sorting-associated protein 26C3.2e-0536.17Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
        +++K+ R N++Y   E L G ++++S+ S+ H G+ L + G+VNLQ+
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
Arabidopsis top hitse value%identityAlignment
AT1G48550.1 Vacuolar protein sorting-associated protein 266.9e-1163.83Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
        V +KLSR+NRIYR SE ++G+I++ S +SISH  IRL++NGSVNLQV
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
AT1G48550.2 Vacuolar protein sorting-associated protein 266.9e-1163.83Show/hide
Query:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV
        V +KLSR+NRIYR SE ++G+I++ S +SISH  IRL++NGSVNLQV
Subjt:  VELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGTAGAGCTCAAGCTTTCTCGAACTAATCGTATCTACCGGCCTTCTGAACATCTTCAAGGCCAGATCATTGTTAATTCTCGTTCCTCGATTTCCCATAGTGGAAT
TCGCCTCGCTCTCAATGGATCCGTCAATTTGCAGGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAGTAGAGCTCAAGCTTTCTCGAACTAATCGTATCTACCGGCCTTCTGAACATCTTCAAGGCCAGATCATTGTTAATTCTCGTTCCTCGATTTCCCATAGTGGAAT
TCGCCTCGCTCTCAATGGATCCGTCAATTTGCAGGTATAA
Protein sequenceShow/hide protein sequence
MPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQV