CuGenDBv2

Gene ID	HG10020771
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Coiled-coil domain-containing protein 12
Genome location	Chr05:2303873..2307825
RNA-Seq Expression	HG10020771
Synteny	HG10020771
Gene Ontology terms	GO:0005684 - U2-type spliceosomal complex (cellular component) GO:0071014 - post-mRNA release spliceosomal complex (cellular component)
InterPro domains	IPR013169 - mRNA splicing factor Cwf18-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6584286.1 Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-67

92.81

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MA+E+DSVEQVAAARKERL+ALRAAQELL+TSDEKNSGGEDKENGAT D EETNL+MKFRNYVPHDKELQEGKL PPVLPKFEDPV TEPPQLKEDPFVN
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN  E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE

XP_004137537.1 coiled-coil domain-containing protein 12 [Cucumis sativus]

9.6e-69

92.81

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MA+EEDSVEQVAAARKERLKALRAAQELL+ SDEKNSGGEDKENGAT D++ETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQLKEDPFVN
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQ+AEGD+D+NGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE

XP_008437152.1 PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo]

2.5e-69

94.77

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MA+EEDS EQVAAARKERLKALRAAQELL+ SDEKNS GEDKENGATADT+ETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQ KEDPFVN
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQNGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE

XP_023542240.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]

1.1e-67

92.21

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MA+EEDSVEQVAAAR+ERL+ALRAAQELL+  DEK SGGEDKENGA ADTEETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPV TEPPQLKEDPFVN
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN  EG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG

XP_038894163.1 coiled-coil domain-containing protein 12 [Benincasa hispida]

4.6e-71

96.1

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Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MA+EEDSVEQVAAARKERL+ALRAAQELL+ SDEKNSGGEDKENGATAD EETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEP QLKEDPFVN
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LR08 Uncharacterized protein

4.6e-69

92.81

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MA+EEDSVEQVAAARKERLKALRAAQELL+ SDEKNSGGEDKENGAT D++ETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQLKEDPFVN
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQ+AEGD+D+NGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE

A0A1S3ATB1 coiled-coil domain-containing protein 12

1.2e-69

94.77

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MA+EEDS EQVAAARKERLKALRAAQELL+ SDEKNS GEDKENGATADT+ETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQ KEDPFVN
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQNGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE

A0A5D3BJ95 Coiled-coil domain-containing protein 12

1.2e-69

94.77

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MA+EEDS EQVAAARKERLKALRAAQELL+ SDEKNS GEDKENGATADT+ETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQ KEDPFVN
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQNGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE

A0A6J1GST8 coiled-coil domain-containing protein 12-like

7.4e-67

90.91

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MA+EEDSVEQVAAAR+ERL+ALRAAQELL+  DEK SGGED+ENGA ADTEE NL MKFRNYVPHDKELQEGKLAPPVLPKFEDPV TEPPQLKEDPFVN
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN  EG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG

A0A6J1JYP1 coiled-coil domain-containing protein 12-like isoform X1

2.0e-67

90.91

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MA+EEDSVEQVAAAR+ERL+ALR AQELL+  DEK SGGED+ENG  ADTEETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPV TEPPQLKEDPFVN
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNG EG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG

SwissProt top hits

e value

%identity

Alignment

Q8R344 Coiled-coil domain-containing protein 12

1.1e-11

35.92

Show/hide

Query:  VEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKL--APPVL--PKFEDPVTTEPPQ--LKEDPFVNI
        +E+ A  RKERLKALR   E     D ++   + K+     +    +  ++ RNYVP D++L+  ++  A PV    K ++ +    P+  ++E    N+
Subjt:  VEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKL--APPVL--PKFEDPVTTEPPQ--LKEDPFVNI

Query:  APKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA
        AP+KP+WDL+RDV KKL+KLE+RTQ+A+ +L+ E+ K ++ +
Subjt:  APKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA

Q8WUD4 Coiled-coil domain-containing protein 12

8.6e-12

35.92

Show/hide

Query:  VEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKL--APPVL--PKFEDPVTTEPPQ--LKEDPFVNI
        +E+ A  RKERLKALR   E     D+++   + K      +  E +  ++ RNYVP D++L++ ++  A PV    K ++ +    P+  ++E    N+
Subjt:  VEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKL--APPVL--PKFEDPVTTEPPQ--LKEDPFVNI

Query:  APKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA
        AP+KP+WDL+RDV KKL+KL++RTQ+A+ +L+ E+ K ++ +
Subjt:  APKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA

Arabidopsis top hits

e value

%identity

Alignment

AT3G05070.1 CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink).

1.0e-44

68.92

Show/hide

Query:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPP--QLKEDPF
        MASE++S+EQ AAARKE LKALRAAQEL           E KE+G     EE    MKFRNYVP  KELQ+GKLAPP LPKFEDP+   PP  + KEDPF
Subjt:  MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPP--QLKEDPF

Query:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGD
        VNIAPKKPNWDLRRDVQKKLDKLERRTQKA++KLMEEQEK+++ AE D
Subjt:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTAGTGAAGAAGACTCCGTCGAGCAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAGCACTTCAGATGAGAAGAATTC
TGGAGGAGAGGATAAAGAGAATGGTGCTACTGCAGATACTGAAGAAACTAATCTTAATATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGCAAGC
TTGCCCCACCTGTATTGCCAAAGTTTGAGGACCCTGTTACTACTGAACCTCCACAATTAAAAGAGGACCCATTTGTGAATATTGCTCCAAAGAAACCGAACTGGGACCTT
AGGAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGAGGAACAGGAAAAGCAAAAGCAGTCAGCTGAAGGAGACGA
TGACCAAAATGGTGCAGAGGGATAG

mRNA sequence

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Protein sequence

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MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVNIAPKKPNWDL
RRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG

HG10020771 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome