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HG10020848 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10020848
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRING-H2 finger protein ATL56-like
Genome locationChr05:2913881..2914264
RNA-Seq ExpressionHG10020848
SyntenyHG10020848
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KCW49298.1 hypothetical protein EUGRSUZ_K02856 [Eucalyptus grandis]2.7e-3262.3Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR-----GEGIWRRNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECVICLENFKFGERCRLLPNCNH
        MVMEI++S VLL +GIAVLVVIHVCIVGRA R       G+ +RNSN    + S EDL+KLPC+EY    K  D + +C +CLENFK GE+CRLLPNC H
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR-----GEGIWRRNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECVICLENFKFGERCRLLPNCNH

Query:  SFHVQCIDIWLLNTPICPICRT
         FH QCID WLL T ICP+CRT
Subjt:  SFHVQCIDIWLLNTPICPICRT

XP_018720505.1 RING-H2 finger protein ATL74 [Eucalyptus grandis]2.7e-3262.3Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR-----GEGIWRRNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECVICLENFKFGERCRLLPNCNH
        MVMEI++S VLL +GIAVLVVIHVCIVGRA R       G+ +RNSN    + S EDL+KLPC+EY    K  D + +C +CLENFK GE+CRLLPNC H
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR-----GEGIWRRNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECVICLENFKFGERCRLLPNCNH

Query:  SFHVQCIDIWLLNTPICPICRT
         FH QCID WLL T ICP+CRT
Subjt:  SFHVQCIDIWLLNTPICPICRT

XP_022954431.1 RING-H2 finger protein ATL56-like [Cucurbita moschata]1.9e-3870.45Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRG--EGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECVICLENFKFGERCRLLPNCNHS
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA RG  EGIWR  SN G K  S +DLEKLPCYEYK  +      +++ECV+CLE FK GERCRLLPNC HS
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRG--EGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECVICLENFKFGERCRLLPNCNHS

Query:  FHVQCIDIWLLNTPICPICRTFAAALPKISFI
        FHV+CID WLL TPICPICRT  A +PK   +
Subjt:  FHVQCIDIWLLNTPICPICRTFAAALPKISFI

XP_022994122.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]6.5e-3971.21Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRG--EGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECVICLENFKFGERCRLLPNCNHS
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA RG  EGIWR  SN G K  S +DLEKLPCYEYK  +      +++ECV+CLE FK GERCRLLPNC HS
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRG--EGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECVICLENFKFGERCRLLPNCNHS

Query:  FHVQCIDIWLLNTPICPICRTFAAALPKISFI
        FHV+CID WLL TPICPICRT  AA+PK   +
Subjt:  FHVQCIDIWLLNTPICPICRTFAAALPKISFI

XP_030475587.1 RING-H2 finger protein ATL56-like [Syzygium oleosum]7.7e-3264.46Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR----GEGIWRRNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECVICLENFKFGERCRLLPNCNHS
        MVMEI+VS VLL VGIAVLVVIHVCIVGRA R      G+ +RN N    + S EDL+KLPC+EY    K    +++C +CLENFK GE+CRLLPNC H 
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR----GEGIWRRNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECVICLENFKFGERCRLLPNCNHS

Query:  FHVQCIDIWLLNTPICPICRT
        FH QCID WLL TPICPICRT
Subjt:  FHVQCIDIWLLNTPICPICRT

TrEMBL top hitse value%identityAlignment
A0A059A647 RING-type domain-containing protein1.3e-3262.3Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR-----GEGIWRRNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECVICLENFKFGERCRLLPNCNH
        MVMEI++S VLL +GIAVLVVIHVCIVGRA R       G+ +RNSN    + S EDL+KLPC+EY    K  D + +C +CLENFK GE+CRLLPNC H
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR-----GEGIWRRNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECVICLENFKFGERCRLLPNCNH

Query:  SFHVQCIDIWLLNTPICPICRT
         FH QCID WLL T ICP+CRT
Subjt:  SFHVQCIDIWLLNTPICPICRT

A0A5N6RPJ5 RING-type domain-containing protein1.4e-3158.33Show/hide
Query:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALR-------GEGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRD---LEMECVICLENFKFGERCRLLPNCNHS
        ME+VVS VLL VGI VLV+IH+CI GRA R       G  + +R SN G KR S  DLE+LPC++YK  +     ++C +CL+NFK G++CRLLPNC HS
Subjt:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALR-------GEGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRD---LEMECVICLENFKFGERCRLLPNCNHS

Query:  FHVQCIDIWLLNTPICPICRTFAAALPKISFI
        FHVQCID WLL TPICPICRT     PKI  I
Subjt:  FHVQCIDIWLLNTPICPICRTFAAALPKISFI

A0A6J1GQW8 RING-H2 finger protein ATL56-like9.2e-3970.45Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRG--EGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECVICLENFKFGERCRLLPNCNHS
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA RG  EGIWR  SN G K  S +DLEKLPCYEYK  +      +++ECV+CLE FK GERCRLLPNC HS
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRG--EGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECVICLENFKFGERCRLLPNCNHS

Query:  FHVQCIDIWLLNTPICPICRTFAAALPKISFI
        FHV+CID WLL TPICPICRT  A +PK   +
Subjt:  FHVQCIDIWLLNTPICPICRTFAAALPKISFI

A0A6J1JUU5 RING-H2 finger protein ATL56-like3.2e-3971.21Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRG--EGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECVICLENFKFGERCRLLPNCNHS
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA RG  EGIWR  SN G K  S +DLEKLPCYEYK  +      +++ECV+CLE FK GERCRLLPNC HS
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRG--EGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECVICLENFKFGERCRLLPNCNHS

Query:  FHVQCIDIWLLNTPICPICRTFAAALPKISFI
        FHV+CID WLL TPICPICRT  AA+PK   +
Subjt:  FHVQCIDIWLLNTPICPICRTFAAALPKISFI

B9RB46 RING-type domain-containing protein5.4e-3155.47Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR---------GEGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRDLE----MECVICLENFKFGERCRLLP
        M MEI+VS VLL VGIAVLV IHVCIVGRA R         G G +  +S YG+K+ S E+L+ LPC++YK  + E     +CV+CLENF  G++C+LLP
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR---------GEGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRDLE----MECVICLENFKFGERCRLLP

Query:  NCNHSFHVQCIDIWLLNTPICPICRTFAAALPKISFI
        NC HSFH QCID WL+ TPICPICRT     PK+  +
Subjt:  NCNHSFHVQCIDIWLLNTPICPICRTFAAALPKISFI

SwissProt top hitse value%identityAlignment
P93823 RING-H2 finger protein ATL12.1e-1139.44Show/hide
Query:  LEKLPCYEYKMRDL----------EMECVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICRT
        +  +P +++K RD+            EC +CL  F+  E+ R++PNC H FH+ CIDIWL     CP+CRT
Subjt:  LEKLPCYEYKMRDL----------EMECVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICRT

Q9LZV8 RING-H2 finger protein ATL741.4e-1250Show/hide
Query:  KEDLEKLPCYEYKMRDLEM---ECVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICR
        K +L+K P  EY   ++++   EC ICL  F  GER R+LP CNHSFH+ CID WL++   CP CR
Subjt:  KEDLEKLPCYEYKMRDLEM---ECVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICR

Q9SG96 RING-H2 finger protein ATL723.2e-1248.48Show/hide
Query:  KEDLEKLPCYEYKMRDLEM---ECVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICR
        K+ L+++P   Y    ++M   EC+ICL +F+ GE+ R+LP CNH FHV+CID WLL+   CP CR
Subjt:  KEDLEKLPCYEYKMRDLEM---ECVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICR

Q9SRQ8 RING-H2 finger protein ATL511.2e-1138.96Show/hide
Query:  LEKLPCYEYKMRDLEME---CVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICRTFAAALPKISFIQL
        ++ +  Y+Y+  D  +E   C +CL  F+  E  RLLP CNH+FHV CID WL +   CP+CR F      +  + L
Subjt:  LEKLPCYEYKMRDLEME---CVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICRTFAAALPKISFIQL

Q9XF63 RING-H2 finger protein ATL39.2e-1244.59Show/hide
Query:  SNYGMKRFSKEDLEKLPCYEYKMRDLE--MECVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICR
        SN G+  F   +L  LP   ++    +  +EC ICL     G++ RLLP CNHSFHV+CID+W  +   CPICR
Subjt:  SNYGMKRFSKEDLEKLPCYEYKMRDLE--MECVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICR

Arabidopsis top hitse value%identityAlignment
AT1G04360.1 RING/U-box superfamily protein1.5e-1239.44Show/hide
Query:  LEKLPCYEYKMRDL----------EMECVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICRT
        +  +P +++K RD+            EC +CL  F+  E+ R++PNC H FH+ CIDIWL     CP+CRT
Subjt:  LEKLPCYEYKMRDL----------EMECVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICRT

AT1G72310.1 RING/U-box superfamily protein6.6e-1344.59Show/hide
Query:  SNYGMKRFSKEDLEKLPCYEYKMRDLE--MECVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICR
        SN G+  F   +L  LP   ++    +  +EC ICL     G++ RLLP CNHSFHV+CID+W  +   CPICR
Subjt:  SNYGMKRFSKEDLEKLPCYEYKMRDLE--MECVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICR

AT3G03550.1 RING/U-box superfamily protein8.6e-1338.96Show/hide
Query:  LEKLPCYEYKMRDLEME---CVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICRTFAAALPKISFIQL
        ++ +  Y+Y+  D  +E   C +CL  F+  E  RLLP CNH+FHV CID WL +   CP+CR F      +  + L
Subjt:  LEKLPCYEYKMRDLEME---CVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICRTFAAALPKISFIQL

AT3G10910.1 RING/U-box superfamily protein2.3e-1348.48Show/hide
Query:  KEDLEKLPCYEYKMRDLEM---ECVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICR
        K+ L+++P   Y    ++M   EC+ICL +F+ GE+ R+LP CNH FHV+CID WLL+   CP CR
Subjt:  KEDLEKLPCYEYKMRDLEM---ECVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICR

AT5G01880.1 RING/U-box superfamily protein1.0e-1350Show/hide
Query:  KEDLEKLPCYEYKMRDLEM---ECVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICR
        K +L+K P  EY   ++++   EC ICL  F  GER R+LP CNHSFH+ CID WL++   CP CR
Subjt:  KEDLEKLPCYEYKMRDLEM---ECVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTATGGAGATTGTTGTATCAGCTGTTCTTTTGGTTGTGGGAATAGCTGTTTTGGTAGTGATTCATGTGTGTATTGTTGGGAGAGCTTTAAGAGGAGAAGGAATTTG
GAGAAGAAATAGTAATTATGGGATGAAGAGATTTTCAAAGGAGGATTTGGAGAAGCTTCCTTGTTATGAGTACAAAATGAGGGATTTAGAAATGGAATGTGTAATTTGTT
TGGAGAATTTCAAATTTGGTGAAAGATGCAGATTGTTGCCTAATTGTAATCATAGTTTTCATGTCCAATGCATAGATATTTGGCTTTTAAATACACCCATTTGCCCAATT
TGTAGAACTTTTGCTGCTGCTCTTCCTAAAATTTCCTTTATTCAATTGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTATGGAGATTGTTGTATCAGCTGTTCTTTTGGTTGTGGGAATAGCTGTTTTGGTAGTGATTCATGTGTGTATTGTTGGGAGAGCTTTAAGAGGAGAAGGAATTTG
GAGAAGAAATAGTAATTATGGGATGAAGAGATTTTCAAAGGAGGATTTGGAGAAGCTTCCTTGTTATGAGTACAAAATGAGGGATTTAGAAATGGAATGTGTAATTTGTT
TGGAGAATTTCAAATTTGGTGAAAGATGCAGATTGTTGCCTAATTGTAATCATAGTTTTCATGTCCAATGCATAGATATTTGGCTTTTAAATACACCCATTTGCCCAATT
TGTAGAACTTTTGCTGCTGCTCTTCCTAAAATTTCCTTTATTCAATTGAATTGA
Protein sequenceShow/hide protein sequence
MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGIWRRNSNYGMKRFSKEDLEKLPCYEYKMRDLEMECVICLENFKFGERCRLLPNCNHSFHVQCIDIWLLNTPICPI
CRTFAAALPKISFIQLN