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HG10020974 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10020974
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionMADS box transcription factor
Genome locationChr05:4117775..4119838
RNA-Seq ExpressionHG10020974
SyntenyHG10020974
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002487 - Transcription factor, K-box


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055340.1 transcription factor CAULIFLOWER D-like isoform X2 [Cucumis melo var. makuwa]1.5e-1966.02Show/hide
Query:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTT-SRISDTNGTSA
        MEDMKRSISSLEARLRHF GEDL PLSVKELKQLERQMSVGIERIRSKK                            LNQLKDV VTT SRISD N TSA
Subjt:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTT-SRISDTNGTSA

Query:  LDM
        L+M
Subjt:  LDM

XP_008439870.2 PREDICTED: transcription factor CAULIFLOWER-like [Cucumis melo]1.5e-1966.02Show/hide
Query:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTT-SRISDTNGTSA
        MEDMKRSISSLEARLRHF GEDL PLSVKELKQLERQMSVGIERIRSKK                            LNQLKDV VTT SRISD N TSA
Subjt:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTT-SRISDTNGTSA

Query:  LDM
        L+M
Subjt:  LDM

XP_023001170.1 MADS-box transcription factor 6-like [Cucurbita maxima]7.5e-1960.78Show/hide
Query:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTTSRISDTNGTSAL
        MEDMKRSI SL+ARLR+FAGEDLGPLS+KELKQLERQMS+GIER+RSKK                            LNQLKDV VTTSRISD N  SA 
Subjt:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTTSRISDTNGTSAL

Query:  DM
        +M
Subjt:  DM

XP_038895204.1 truncated transcription factor CAULIFLOWER D-like isoform X1 [Benincasa hispida]9.4e-2267.65Show/hide
Query:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTTSRISDTNGTSAL
        +EDMKRSISSLEARLRHFAGEDL PLSVKELKQLERQMSVGIERIRSKK                            LNQLKDV VTTSRISD NG SAL
Subjt:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTTSRISDTNGTSAL

Query:  DM
        DM
Subjt:  DM

XP_038895205.1 truncated transcription factor CAULIFLOWER D-like isoform X2 [Benincasa hispida]9.4e-2267.65Show/hide
Query:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTTSRISDTNGTSAL
        +EDMKRSISSLEARLRHFAGEDL PLSVKELKQLERQMSVGIERIRSKK                            LNQLKDV VTTSRISD NG SAL
Subjt:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTTSRISDTNGTSAL

Query:  DM
        DM
Subjt:  DM

TrEMBL top hitse value%identityAlignment
A0A1S3B0H5 transcription factor CAULIFLOWER-like7.3e-2066.02Show/hide
Query:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTT-SRISDTNGTSA
        MEDMKRSISSLEARLRHF GEDL PLSVKELKQLERQMSVGIERIRSKK                            LNQLKDV VTT SRISD N TSA
Subjt:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTT-SRISDTNGTSA

Query:  LDM
        L+M
Subjt:  LDM

A0A5A7UJH6 Transcription factor CAULIFLOWER D-like isoform X27.3e-2066.02Show/hide
Query:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTT-SRISDTNGTSA
        MEDMKRSISSLEARLRHF GEDL PLSVKELKQLERQMSVGIERIRSKK                            LNQLKDV VTT SRISD N TSA
Subjt:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTT-SRISDTNGTSA

Query:  LDM
        L+M
Subjt:  LDM

A0A6J1C6N3 truncated transcription factor CAULIFLOWER D-like8.9e-1859.22Show/hide
Query:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTTSRIS-DTNGTSA
        ME+M+RSISSLE+RLRHFAGEDLGPLSVK+LKQLERQ+SVGIER+RSKK                            LNQLKDV VT SR S D N +SA
Subjt:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTTSRIS-DTNGTSA

Query:  LDM
        L+M
Subjt:  LDM

A0A6J1E6Y4 truncated transcription factor CAULIFLOWER D-like8.0e-1962.75Show/hide
Query:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTTSRISDTNGTSAL
        MEDMKRSI SL+ARLR+FAGEDLG LS+KELKQLERQMSVGIER+RSKK                            LNQLKDV VTTSRISD N  SAL
Subjt:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTTSRISDTNGTSAL

Query:  DM
        DM
Subjt:  DM

A0A6J1KKG0 MADS-box transcription factor 6-like3.6e-1960.78Show/hide
Query:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTTSRISDTNGTSAL
        MEDMKRSI SL+ARLR+FAGEDLGPLS+KELKQLERQMS+GIER+RSKK                            LNQLKDV VTTSRISD N  SA 
Subjt:  MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----------------------------LNQLKDVTVTTSRISDTNGTSAL

Query:  DM
        +M
Subjt:  DM

SwissProt top hitse value%identityAlignment
A2XDY1 MADS-box transcription factor 13.4e-0642.65Show/hide
Query:  MKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----LNQLKDVTVTTSRISDTN
        +K  +  L+   R+  GEDLGPLS+KEL+QLE Q+ V +++IRS+K    L+QL D+     ++ D N
Subjt:  MKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----LNQLKDVTVTTSRISDTN

D7SMN6 Agamous-like MADS-box protein FUL-L1.3e-0548.08Show/hide
Query:  ISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKKLNQLKDVTVT
        I  L+  LRHF GEDL PLS++EL+ LE+Q+   ++RIR++K NQL   +++
Subjt:  ISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKKLNQLKDVTVT

Q10PZ9 MADS-box transcription factor 13.4e-0642.65Show/hide
Query:  MKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----LNQLKDVTVTTSRISDTN
        +K  +  L+   R+  GEDLGPLS+KEL+QLE Q+ V +++IRS+K    L+QL D+     ++ D N
Subjt:  MKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----LNQLKDVTVTTSRISDTN

Q8LLR2 Agamous-like MADS-box protein MADS21.3e-0545.61Show/hide
Query:  MKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----LNQLKDV
        +K    SL+   R+  GEDLGPL+ KEL+QLERQ+   ++++RS K    L+QL D+
Subjt:  MKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----LNQLKDV

Q9LLA7 MADS-box protein AeAP3-2 (Fragment)4.4e-0647.83Show/hide
Query:  MKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK
        MK  I  L+A +RHFAGEDL  L++ E+ QLE+Q+ + + ++RS+K
Subjt:  MKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK

Arabidopsis top hitse value%identityAlignment
AT1G24260.1 K-box region and MADS-box transcription factor family protein4.5e-0638.36Show/hide
Query:  MKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----LNQLKDVTVTTSRISDTNGTSAL
        +K    +L+   R+  GEDLGPLS KEL+ LERQ+   +++IR+ +    L+QL D+      +++TN T  L
Subjt:  MKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----LNQLKDVTVTTSRISDTNGTSAL

AT1G24260.2 K-box region and MADS-box transcription factor family protein4.5e-0638.36Show/hide
Query:  MKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----LNQLKDVTVTTSRISDTNGTSAL
        +K    +L+   R+  GEDLGPLS KEL+ LERQ+   +++IR+ +    L+QL D+      +++TN T  L
Subjt:  MKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----LNQLKDVTVTTSRISDTNGTSAL

AT1G26310.1 K-box region and MADS-box transcription factor family protein1.3e-0546Show/hide
Query:  MKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKKLNQL
        +K  I  LE   RH+ GE+L P+S+K+L+ LE+Q+   ++ IRS+K NQL
Subjt:  MKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKKLNQL

AT5G15800.1 K-box region and MADS-box transcription factor family protein5.9e-0637.33Show/hide
Query:  MKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----LNQLKDVTVTTSRISDTNGTSALDM
        +K    +L+ + R+  GEDLGPL+ KEL+QLERQ+   ++++RS K    L+QL D+      + +TN   A+ +
Subjt:  MKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----LNQLKDVTVTTSRISDTNGTSALDM

AT5G15800.2 K-box region and MADS-box transcription factor family protein5.9e-0637.33Show/hide
Query:  MKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----LNQLKDVTVTTSRISDTNGTSALDM
        +K    +L+ + R+  GEDLGPL+ KEL+QLERQ+   ++++RS K    L+QL D+      + +TN   A+ +
Subjt:  MKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKK----LNQLKDVTVTTSRISDTNGTSALDM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATATGAAAAGATCAATAAGCAGCTTGGAAGCAAGATTAAGACACTTTGCTGGAGAGGATCTGGGACCGTTGAGCGTAAAGGAGTTAAAACAGTTAGAAAGACA
AATGAGTGTGGGAATTGAACGTATCCGCTCTAAAAAGTTGAATCAGCTTAAGGATGTGACTGTCACAACTTCAAGAATCTCAGACACTAATGGCACCTCTGCACTCGATA
TGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGATATGAAAAGATCAATAAGCAGCTTGGAAGCAAGATTAAGACACTTTGCTGGAGAGGATCTGGGACCGTTGAGCGTAAAGGAGTTAAAACAGTTAGAAAGACA
AATGAGTGTGGGAATTGAACGTATCCGCTCTAAAAAGTTGAATCAGCTTAAGGATGTGACTGTCACAACTTCAAGAATCTCAGACACTAATGGCACCTCTGCACTCGATA
TGTAA
Protein sequenceShow/hide protein sequence
MEDMKRSISSLEARLRHFAGEDLGPLSVKELKQLERQMSVGIERIRSKKLNQLKDVTVTTSRISDTNGTSALDM