; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10021075 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10021075
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionpolyadenylate-binding protein RBP45-like isoform X2
Genome locationChr05:5114231..5114664
RNA-Seq ExpressionHG10021075
SyntenyHG10021075
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145109.1 polyadenylate-binding protein RBP45 isoform X1 [Cucumis sativus]4.5e-4797.89Show/hide
Query:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
        RNCAEEALR LNGTQIGGQNIRLSWGRSPSNKQ QADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
Subjt:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM

XP_008441138.1 PREDICTED: polyadenylate-binding protein RBP45-like isoform X1 [Cucumis melo]3.8e-4697.92Show/hide
Query:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQ-SQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
        RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQ  QADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
Subjt:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQ-SQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM

XP_008441139.1 PREDICTED: polyadenylate-binding protein RBP45-like isoform X2 [Cucumis melo]1.5e-4798.95Show/hide
Query:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
        RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQ QADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
Subjt:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM

XP_038894240.1 polyadenylate-binding protein RBP45 isoform X1 [Benincasa hispida]1.1e-4596.88Show/hide
Query:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQ-SQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
        RNCAEEALR LNGTQIGGQNIRLSWGRSPSNKQ  QADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
Subjt:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQ-SQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM

XP_038894242.1 polyadenylate-binding protein RBP45 isoform X2 [Benincasa hispida]4.5e-4797.89Show/hide
Query:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
        RNCAEEALR LNGTQIGGQNIRLSWGRSPSNKQ QADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
Subjt:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM

TrEMBL top hitse value%identityAlignment
A0A0A0LU90 Uncharacterized protein1.1e-4697.87Show/hide
Query:  NCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
        NCAEEALR LNGTQIGGQNIRLSWGRSPSNKQ QADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
Subjt:  NCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM

A0A1S3B2A3 polyadenylate-binding protein RBP45-like isoform X39.1e-4697.89Show/hide
Query:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
        RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQ  ADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
Subjt:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM

A0A1S3B2Q3 polyadenylate-binding protein RBP45-like isoform X27.5e-4898.95Show/hide
Query:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
        RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQ QADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
Subjt:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM

A0A1S3B2R4 polyadenylate-binding protein RBP45-like isoform X11.8e-4697.92Show/hide
Query:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQ-SQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
        RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQ  QADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
Subjt:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQ-SQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM

A0A1S3B3E5 polyadenylate-binding protein RBP45-like isoform X47.0e-4697.89Show/hide
Query:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
        RNCAEEALRALNGTQIGGQNIRLSWGRSPSNK  QADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM
Subjt:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQGGYM

SwissProt top hitse value%identityAlignment
Q0J9Y2 RNA-binding protein L4.8e-2060.61Show/hide
Query:  VIRNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQW----NGGGYY-GYGQGYENYSYAPAPQDPNMF-YSGYGGYGNYQQPPPQQPQQQQQ
        V R  AE+AL  L GT IGGQN+RLSWGRS SNKQ Q D NQW      GGYY GYGQGYE Y     PQDPNM+ Y  Y GY NYQQ    Q Q  QQ
Subjt:  VIRNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQW----NGGGYY-GYGQGYENYSYAPAPQDPNMF-YSGYGGYGNYQQPPPQQPQQQQQ

Q93W34 Polyadenylate-binding protein RBP45C2.4e-2770.97Show/hide
Query:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQW-NGGGYYGY-GQGYENYSYAPAPQDPNMFYSGY--GGYGNYQQPPPQQPQQQ
        R CAE+AL  LNGTQ+GGQ+IRLSWGRSPSNKQ+Q D  Q+  GGGYYGY  QGYE Y YAP PQDPN +Y GY  GGYGNYQQP   Q QQQ
Subjt:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQW-NGGGYYGY-GQGYENYSYAPAPQDPNMFYSGY--GGYGNYQQPPPQQPQQQ

Q9FPJ8 Polyadenylate-binding protein RBP45A4.8e-2067.5Show/hide
Query:  AEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGY---GQGYENYSYAPAPQDPNMFYSGYGGYGNYQQ
        AE AL  LNGTQ+GGQ+IRLSWGRSP NKQS  D  QWNGGGYYGY    QG   Y+  P  QDPN +Y GY GYGNYQQ
Subjt:  AEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGY---GQGYENYSYAPAPQDPNMFYSGYGGYGNYQQ

Q9LEB4 Polyadenylate-binding protein RBP456.5e-2568.67Show/hide
Query:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQW--NGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQP
        R  AE+AL +LNGTQ+GGQ+IRLSWGRSPS+KQ+  D  QW  +GG YYGYGQGYE Y YAP  QDPNM+Y  Y GY NYQQP
Subjt:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQW--NGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQP

Q9SAB3 Polyadenylate-binding protein RBP45B2.0e-2161.17Show/hide
Query:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGY--GGY-GNYQ------QPPPQQPQQQQQ
        ++CAEEALR LNG Q+GG  +RLSWGRSPSNKQS  DP+Q+    Y GYGQG E Y Y   PQDPN +Y GY  GGY G YQ      Q PPQQP QQQQ
Subjt:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGY--GGY-GNYQ------QPPPQQPQQQQQ

Query:  GGY
         G+
Subjt:  GGY

Arabidopsis top hitse value%identityAlignment
AT1G11650.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.4e-2261.17Show/hide
Query:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGY--GGY-GNYQ------QPPPQQPQQQQQ
        ++CAEEALR LNG Q+GG  +RLSWGRSPSNKQS  DP+Q+    Y GYGQG E Y Y   PQDPN +Y GY  GGY G YQ      Q PPQQP QQQQ
Subjt:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGY--GGY-GNYQ------QPPPQQPQQQQQ

Query:  GGY
         G+
Subjt:  GGY

AT4G27000.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.7e-2870.97Show/hide
Query:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQW-NGGGYYGY-GQGYENYSYAPAPQDPNMFYSGY--GGYGNYQQPPPQQPQQQ
        R CAE+AL  LNGTQ+GGQ+IRLSWGRSPSNKQ+Q D  Q+  GGGYYGY  QGYE Y YAP PQDPN +Y GY  GGYGNYQQP   Q QQQ
Subjt:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQW-NGGGYYGY-GQGYENYSYAPAPQDPNMFYSGY--GGYGNYQQPPPQQPQQQ

AT5G19350.1 RNA-binding (RRM/RBD/RNP motifs) family protein4.8e-1551.11Show/hide
Query:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNK--QSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQ
        R  AEEA++ + G  IG Q +R+SW ++P      +QADPNQWN  GYYGYGQGY+ Y+Y  A QDP+++   YGGYG      PQ PQQ
Subjt:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNK--QSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQ

AT5G19350.2 RNA-binding (RRM/RBD/RNP motifs) family protein4.8e-1551.11Show/hide
Query:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNK--QSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQ
        R  AEEA++ + G  IG Q +R+SW ++P      +QADPNQWN  GYYGYGQGY+ Y+Y  A QDP+++   YGGYG      PQ PQQ
Subjt:  RNCAEEALRALNGTQIGGQNIRLSWGRSPSNK--QSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQ

AT5G54900.1 RNA-binding protein 45A3.4e-2167.5Show/hide
Query:  AEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGY---GQGYENYSYAPAPQDPNMFYSGYGGYGNYQQ
        AE AL  LNGTQ+GGQ+IRLSWGRSP NKQS  D  QWNGGGYYGY    QG   Y+  P  QDPN +Y GY GYGNYQQ
Subjt:  AEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGY---GQGYENYSYAPAPQDPNMFYSGYGGYGNYQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACCCTAAAATCTTAATCTCCCTTGAATTGGTGGTGACTCATTTCGTGGTTATTAGAAACTGTGCTGAGGAAGCATTACGCGCATTGAATGGAACACAAATTGGTGG
GCAGAACATTAGACTTTCATGGGGACGTAGTCCTTCAAATAAACAGTCACAGGCGGATCCTAACCAATGGAATGGAGGTGGCTATTATGGGTATGGGCAAGGATATGAAA
ACTATAGCTATGCTCCAGCTCCGCAGGACCCTAATATGTTCTACAGTGGCTATGGCGGCTATGGAAATTACCAGCAGCCACCACCACAGCAACCGCAGCAGCAGCAGCAA
GGAGGATACATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTACCCTAAAATCTTAATCTCCCTTGAATTGGTGGTGACTCATTTCGTGGTTATTAGAAACTGTGCTGAGGAAGCATTACGCGCATTGAATGGAACACAAATTGGTGG
GCAGAACATTAGACTTTCATGGGGACGTAGTCCTTCAAATAAACAGTCACAGGCGGATCCTAACCAATGGAATGGAGGTGGCTATTATGGGTATGGGCAAGGATATGAAA
ACTATAGCTATGCTCCAGCTCCGCAGGACCCTAATATGTTCTACAGTGGCTATGGCGGCTATGGAAATTACCAGCAGCCACCACCACAGCAACCGCAGCAGCAGCAGCAA
GGAGGATACATGTAG
Protein sequenceShow/hide protein sequence
MYPKILISLELVVTHFVVIRNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQSQADPNQWNGGGYYGYGQGYENYSYAPAPQDPNMFYSGYGGYGNYQQPPPQQPQQQQQ
GGYM