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HG10021213 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10021213
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein LOL2
Genome locationChr05:6632869..6635890
RNA-Seq ExpressionHG10021213
SyntenyHG10021213
Gene Ontology termsGO:0009617 - response to bacterium (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146601.1 protein LOL2 isoform X2 [Cucumis sativus]1.0e-6695.42Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSS
        MD HEIEKDEDDGPPPGWEPITP LPLPPPP LSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGA+SVRCSS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        CTSVTEIGVHNRRPPWSV QGQAAPP NFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

XP_008442544.1 PREDICTED: protein LOL2 isoform X4 [Cucumis melo]1.6e-6493.89Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSS
        MD HEIEKDEDDGPPPGWEPITP LPLPP P LS DMAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGA+SVRCSS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        CTSVTEIGVHNRRPPWSVQQGQAAPP NFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

XP_011653178.1 protein LOL2 isoform X1 [Cucumis sativus]2.5e-6594.7Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSS-DMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCS
        MD HEIEKDEDDGPPPGWEPITP LPLPPPP LSS DMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGA+SVRCS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSS-DMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCS

Query:  SCTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        SCTSVTEIGVHNRRPPWSV QGQAAPP NFVQ
Subjt:  SCTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

XP_022927005.1 protein LOL2 [Cucurbita moschata]3.2e-6593.13Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSS
        M+ HEIEKDEDDGPPPGWEPITPPLP PPP PLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVN+VLEAHEVGQVKCGSCAVLLMYPYGA+SVRCSS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        CT VTEIGVHNRRPPWSVQQGQAAPP N VQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

XP_023001758.1 protein LOL2 [Cucurbita maxima]2.7e-6492.37Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSS
        M+ HEIEKDEDDGPPPGWEPITPPLP  PP PLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVN+VLEAHEVGQVKCGSCAVLLMYPYGA+SVRCSS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        CT VTEIGVHNRRPPWSVQQGQAAPP N VQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

TrEMBL top hitse value%identityAlignment
A0A0A0LXE3 Uncharacterized protein4.8e-6795.42Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSS
        MD HEIEKDEDDGPPPGWEPITP LPLPPPP LSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGA+SVRCSS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        CTSVTEIGVHNRRPPWSV QGQAAPP NFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

A0A1S3B6Q2 protein LOL2 isoform X47.7e-6593.89Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSS
        MD HEIEKDEDDGPPPGWEPITP LPLPP P LS DMAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGA+SVRCSS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        CTSVTEIGVHNRRPPWSVQQGQAAPP NFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

A0A5A7UQS3 Protein LOL2 isoform X47.7e-6593.89Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSS
        MD HEIEKDEDDGPPPGWEPITP LPLPP P LS DMAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGA+SVRCSS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        CTSVTEIGVHNRRPPWSVQQGQAAPP NFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

A0A6J1EMN3 protein LOL21.6e-6593.13Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSS
        M+ HEIEKDEDDGPPPGWEPITPPLP PPP PLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVN+VLEAHEVGQVKCGSCAVLLMYPYGA+SVRCSS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        CT VTEIGVHNRRPPWSVQQGQAAPP N VQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

A0A6J1KRG9 protein LOL21.3e-6492.37Show/hide
Query:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSS
        M+ HEIEKDEDDGPPPGWEPITPPLP  PP PLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVN+VLEAHEVGQVKCGSCAVLLMYPYGA+SVRCSS
Subjt:  MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ
        CT VTEIGVHNRRPPWSVQQGQAAPP N VQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPANFVQ

SwissProt top hitse value%identityAlignment
O65426 Protein LOL21.8e-3457.14Show/hide
Query:  EIEKDEDDGPPPGWEPITPPLPL--------PPPPPLS-SDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATS
        E E++E++GPPPGWE    P P+        P P  +   + AQMVCG+CRRLL YL+G+++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +
Subjt:  EIEKDEDDGPPPGWEPITPPLPL--------PPPPPLS-SDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATS

Query:  VRCSSCTSVTEIGVHNRRPPWSVQQG
        VRCSSC SVT+I  +N+RPPWS QQG
Subjt:  VRCSSCTSVTEIGVHNRRPPWSVQQG

P94077 Protein LSD17.3e-2043.64Show/hide
Query:  PPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGATSVRCSSCTSVTEIGVHNRRPPWSVQ
        PPPP   DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+ CG C   LMYPYGA+SV+C+ C  VT + + N R P    
Subjt:  PPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGATSVRCSSCTSVTEIGVHNRRPPWSVQ

Query:  Q--GQAAPPA
        +  G A PP+
Subjt:  Q--GQAAPPA

Q0J7V9 Protein LSD12.5e-2055.13Show/hide
Query:  PPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSSCTSVTEIG
        P   ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  +EA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSSCTSVTEIG

Q704V3 Protein LOL51.6e-2756.19Show/hide
Query:  PGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSSCTSVTEIGVHNRRPP
        P  +   P +P PP P L+ ++ QMVCG+CR LL Y +GA YV C+CC T+N+VLEAHEVG+V CG CA LLMYP+GA +V+CS C  VTEIG  N R  
Subjt:  PGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSSCTSVTEIGVHNRRPP

Query:  WSVQQ
         S++Q
Subjt:  WSVQQ

Q93ZB1 Protein LOL11.7e-2157.69Show/hide
Query:  PPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSSCTSVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSSCTSVTEIG

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 11.2e-2257.69Show/hide
Query:  PPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSSCTSVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSSCTSVTEIG

AT1G32540.2 lsd one like 11.2e-2257.69Show/hide
Query:  PPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSSCTSVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSSCTSVTEIG

AT1G32540.3 lsd one like 11.2e-2257.69Show/hide
Query:  PPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSSCTSVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSSCTSVTEIG

AT4G20380.2 LSD1 zinc finger family protein5.2e-2143.64Show/hide
Query:  PPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGATSVRCSSCTSVTEIGVHNRRPPWSVQ
        PPPP   DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+ CG C   LMYPYGA+SV+C+ C  VT + + N R P    
Subjt:  PPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGATSVRCSSCTSVTEIGVHNRRPPWSVQ

Query:  Q--GQAAPPA
        +  G A PP+
Subjt:  Q--GQAAPPA

AT4G21610.1 lsd one like 21.3e-3557.14Show/hide
Query:  EIEKDEDDGPPPGWEPITPPLPL--------PPPPPLS-SDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATS
        E E++E++GPPPGWE    P P+        P P  +   + AQMVCG+CRRLL YL+G+++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +
Subjt:  EIEKDEDDGPPPGWEPITPPLPL--------PPPPPLS-SDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATS

Query:  VRCSSCTSVTEIGVHNRRPPWSVQQG
        VRCSSC SVT+I  +N+RPPWS QQG
Subjt:  VRCSSCTSVTEIGVHNRRPPWSVQQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCCCATGAAATCGAGAAAGACGAAGACGACGGGCCTCCGCCTGGATGGGAACCCATCACTCCGCCGCTGCCGCTACCACCGCCGCCGCCACTTTCTTCTGATAT
GGCACAAATGGTCTGTGGTACCTGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCTAGATATGTTCAGTGCTCTTGCTGTTCAACAGTTAACTTTGTGTTAGAAGCTCACG
AGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCAACATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACAGAAATTGGGGTGCAT
AATAGACGCCCACCGTGGTCTGTCCAGCAAGGACAAGCAGCCCCTCCTGCCAACTTTGTCCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTCCCATGAAATCGAGAAAGACGAAGACGACGGGCCTCCGCCTGGATGGGAACCCATCACTCCGCCGCTGCCGCTACCACCGCCGCCGCCACTTTCTTCTGATAT
GGCACAAATGGTCTGTGGTACCTGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCTAGATATGTTCAGTGCTCTTGCTGTTCAACAGTTAACTTTGTGTTAGAAGCTCACG
AGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCAACATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACAGAAATTGGGGTGCAT
AATAGACGCCCACCGTGGTCTGTCCAGCAAGGACAAGCAGCCCCTCCTGCCAACTTTGTCCAGTAG
Protein sequenceShow/hide protein sequence
MDSHEIEKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGATSVRCSSCTSVTEIGVH
NRRPPWSVQQGQAAPPANFVQ