; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10021234 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10021234
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSquamosa promoter-binding-like protein
Genome locationChr05:6820139..6820552
RNA-Seq ExpressionHG10021234
SyntenyHG10021234
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009908 - flower development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004333 - SBP domain
IPR036893 - SBP domain superfamily
IPR044817 - Squamosa promoter-binding-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057003.1 squamosa promoter-binding-like protein 3 [Cucumis melo var. makuwa]6.0e-4685.61Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEID-AELGFEGDFNKKKKILTSGGSSNKKSGSGYGGA--AAAPPSCQADNCNADLSGSKR
        MATGKADGKRRLNYYEM   EEEDEE+EEEEEEE+EDE+QEID   LGF GDFNKKKK+LTSGGSSNKKSGSG+G    AAAPP CQADNCNADLSGSKR
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEID-AELGFEGDFNKKKKILTSGGSSNKKSGSGYGGA--AAAPPSCQADNCNADLSGSKR

Query:  YYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        Y+RRHKVCEFHAKAPAVAVAGI QRFCQQCSR
Subjt:  YYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR

XP_008442764.1 PREDICTED: squamosa promoter-binding-like protein 3 [Cucumis melo]4.1e-4782.61Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEID-AELGFEGDFNKKKKILTSGGSSNKKSGSGYGGA--AAAPPSCQADNCNADLSGSKR
        MATGKADGKRRLNYYEM   EEEDEE+EEEEEEE+EDE+QEID   LGF GDFNKKKK+LTSGGSSNKKSGSG+G    AAAPP CQADNCNADLSGSKR
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEID-AELGFEGDFNKKKKILTSGGSSNKKSGSGYGGA--AAAPPSCQADNCNADLSGSKR

Query:  YYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRYFGTKK
        Y+RRHKVCEFHAKAPAVAVAGI QRFCQQCSR+ G ++
Subjt:  YYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRYFGTKK

XP_011653273.1 squamosa promoter-binding-like protein 3 [Cucumis sativus]1.5e-4476.64Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGG--AAAAPPSCQADNCNADLSGSKRY
        MATGKADGKRRL+YYEMEE++EED       EEE+EDE+QEIDAELGF GDFNKKKKI TSGGSSNKKS S +GG  AAA PP CQADNCNADLS SKRY
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGG--AAAAPPSCQADNCNADLSGSKRY

Query:  YRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRYFGTKK
        +RRHKVCEFHAKAP V V GI QRFCQQCSR+ G ++
Subjt:  YRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRYFGTKK

XP_038894994.1 squamosa promoter-binding-like protein 3 isoform X1 [Benincasa hispida]2.2e-4885.93Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR
        MATGKADGKRRLNYYEMEE+EEEDEEEEEEEE+ EE   Q+I  ELGF GDFNKKKKILTSG SSNKKSGSGYGGAAAA PSCQADNCNADLSGSKRY+R
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR

Query:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSRYFGTKK
        RHKVCEFHAKAPAVAVAGI QRFCQQCSR+ G ++
Subjt:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSRYFGTKK

XP_038894995.1 squamosa promoter-binding protein 2-like isoform X2 [Benincasa hispida]3.2e-4789.15Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR
        MATGKADGKRRLNYYEMEE+EEEDEEEEEEEE+ EE   Q+I  ELGF GDFNKKKKILTSG SSNKKSGSGYGGAAAA PSCQADNCNADLSGSKRY+R
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR

Query:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        RHKVCEFHAKAPAVAVAGI QRFCQQCSR
Subjt:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSR

TrEMBL top hitse value%identityAlignment
A0A0A0LSD9 Squamosa promoter-binding-like protein7.1e-4576.64Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGG--AAAAPPSCQADNCNADLSGSKRY
        MATGKADGKRRL+YYEMEE++EED       EEE+EDE+QEIDAELGF GDFNKKKKI TSGGSSNKKS S +GG  AAA PP CQADNCNADLS SKRY
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGG--AAAAPPSCQADNCNADLSGSKRY

Query:  YRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRYFGTKK
        +RRHKVCEFHAKAP V V GI QRFCQQCSR+ G ++
Subjt:  YRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRYFGTKK

A0A1S3B6H6 squamosa promoter-binding-like protein 32.0e-4782.61Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEID-AELGFEGDFNKKKKILTSGGSSNKKSGSGYGGA--AAAPPSCQADNCNADLSGSKR
        MATGKADGKRRLNYYEM   EEEDEE+EEEEEEE+EDE+QEID   LGF GDFNKKKK+LTSGGSSNKKSGSG+G    AAAPP CQADNCNADLSGSKR
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEID-AELGFEGDFNKKKKILTSGGSSNKKSGSGYGGA--AAAPPSCQADNCNADLSGSKR

Query:  YYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRYFGTKK
        Y+RRHKVCEFHAKAPAVAVAGI QRFCQQCSR+ G ++
Subjt:  YYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRYFGTKK

A0A5D3DT58 Squamosa promoter-binding-like protein 32.9e-4685.61Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEID-AELGFEGDFNKKKKILTSGGSSNKKSGSGYGGA--AAAPPSCQADNCNADLSGSKR
        MATGKADGKRRLNYYEM   EEEDEE+EEEEEEE+EDE+QEID   LGF GDFNKKKK+LTSGGSSNKKSGSG+G    AAAPP CQADNCNADLSGSKR
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEID-AELGFEGDFNKKKKILTSGGSSNKKSGSGYGGA--AAAPPSCQADNCNADLSGSKR

Query:  YYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR
        Y+RRHKVCEFHAKAPAVAVAGI QRFCQQCSR
Subjt:  YYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSR

A0A6J1EH14 Squamosa promoter-binding-like protein5.6e-4274.07Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR
        MATGKADGKRRLNYY+M           EEEEEEEE+E + +D ELGF GDFNKKKK L SGG SNKKSGSGYGGAA A PSCQADNCNADLS SKRY+ 
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR

Query:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSRYFGTKK
        RHKVCEFHAKA AV VAGI QRFCQQCSR+ G ++
Subjt:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSRYFGTKK

A0A6J1KHJ1 Squamosa promoter-binding-like protein7.3e-4273.33Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR
        MATGKADGKRRLNYY+M            EEEEEEE+E + +D ELGF GDFNKKKK L+SGG SNKKSGSGYGGAA A PSCQADNCNADLS SKRY+ 
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR

Query:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSRYFGTKK
        RHKVCEFHAKA AV VAGI QRFCQQCSR+ G ++
Subjt:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSRYFGTKK

SwissProt top hitse value%identityAlignment
A2YFT9 Squamosa promoter-binding-like protein 103.2e-1867.21Show/hide
Query:  GSGYGGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRY
        G G+GGA   PP CQA+ C ADLSG+K Y+RRHKVCE+HAKA  VA +G  QRFCQQCSR+
Subjt:  GSGYGGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRY

Q0DAE8 Squamosa promoter-binding-like protein 103.2e-1867.21Show/hide
Query:  GSGYGGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRY
        G G+GGA   PP CQA+ C ADLSG+K Y+RRHKVCE+HAKA  VA +G  QRFCQQCSR+
Subjt:  GSGYGGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRY

Q0E3F8 Squamosa promoter-binding-like protein 53.9e-1666.67Show/hide
Query:  GYGGAAAA----PPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRY
        G G AAAA    PP CQA+ C ADLS +K Y+RRHKVC+FHAKA AV  AG  QRFCQQCSR+
Subjt:  GYGGAAAA----PPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRY

Q38740 Squamosa promoter-binding protein 21.1e-1551.33Show/hide
Query:  EEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGY---GGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVA
        +E  + EEEEE E+EE+E+QE   ++ F     KKKK L  G  S  KSG  +   GG   A P C  +NC ADL   K+YY+RH+VCE HAKAP V+V 
Subjt:  EEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGY---GGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVA

Query:  GIPQRFCQQCSRY
        G+ QRFCQQCSR+
Subjt:  GIPQRFCQQCSRY

Q7EXZ2 Squamosa promoter-binding-like protein 148.7e-1656.1Show/hide
Query:  SSNKKSGSGYGG---------AAAA------PPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRY
        SS+K +G G GG         AAAA      PP CQ + C ADLSG K YY RHKVC  H+KAP V VAG+ QRFCQQCSR+
Subjt:  SSNKKSGSGYGG---------AAAA------PPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRY

Arabidopsis top hitse value%identityAlignment
AT1G02065.1 squamosa promoter binding protein-like 82.4e-1659.09Show/hide
Query:  KKSGSGYGGAA--AAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRY
        ++S  G  G A   + P CQA+ CNADLS +K Y+RRHKVCEFH+KA  V  AG+ QRFCQQCSR+
Subjt:  KKSGSGYGGAA--AAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRY

AT1G02065.2 squamosa promoter binding protein-like 81.4e-1657.14Show/hide
Query:  KKSGSGYGGAA--AAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRYFGTK
        ++S  G  G A   + P CQA+ CNADLS +K Y+RRHKVCEFH+KA  V  AG+ QRFCQQCSR+   K
Subjt:  KKSGSGYGGAA--AAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRYFGTK

AT2G33810.1 squamosa promoter binding protein-like 31.9e-1341.54Show/hide
Query:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR
        M   KA+GKR L   E+ E+EEE+EE E+E+  EEE+                KK+K                G A ++   CQ ++C AD+S +K+Y++
Subjt:  MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYR

Query:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSRY
        RHKVC+FHAKAP V ++G+ QRFCQQCSR+
Subjt:  RHKVCEFHAKAPAVAVAGIPQRFCQQCSRY

AT2G42200.1 squamosa promoter binding protein-like 96.8e-1652.11Show/hide
Query:  TSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRY
        +SGG SN++   G  G +   P CQ + C  DL+ +K YY RH+VC  H+K P V VAGI QRFCQQCSR+
Subjt:  TSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRY

AT3G15270.1 squamosa promoter binding protein-like 54.1e-1342.86Show/hide
Query:  EEDEQQEIDAELGFEGDFNKKKKIL--TSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRY
        EE+ +  +D E    GD +K+KK++    G S+++               CQ D C  +L+ +K+YYRRH+VCE HAKA A  VAG+ QRFCQQCSR+
Subjt:  EEDEQQEIDAELGFEGDFNKKKKIL--TSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAKAPAVAVAGIPQRFCQQCSRY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTGGAAAAGCTGATGGAAAAAGGAGGCTAAATTATTACGAAATGGAGGAACAGGAGGAAGAAGATGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAAGA
TGAGCAACAAGAAATTGATGCAGAATTAGGGTTTGAAGGGGATTTCAATAAGAAGAAGAAAATTCTGACTTCTGGGGGTTCTTCTAATAAAAAATCAGGATCTGGGTACG
GCGGAGCTGCGGCGGCGCCGCCCTCCTGTCAGGCGGATAATTGCAATGCTGATCTGTCCGGTTCAAAGCGGTACTATCGCCGTCATAAGGTCTGTGAGTTTCATGCTAAG
GCTCCGGCGGTTGCGGTGGCCGGAATCCCCCAGCGGTTCTGTCAACAATGCAGCAGGTATTTTGGGACAAAAAAAAAACCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACTGGAAAAGCTGATGGAAAAAGGAGGCTAAATTATTACGAAATGGAGGAACAGGAGGAAGAAGATGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAAGA
TGAGCAACAAGAAATTGATGCAGAATTAGGGTTTGAAGGGGATTTCAATAAGAAGAAGAAAATTCTGACTTCTGGGGGTTCTTCTAATAAAAAATCAGGATCTGGGTACG
GCGGAGCTGCGGCGGCGCCGCCCTCCTGTCAGGCGGATAATTGCAATGCTGATCTGTCCGGTTCAAAGCGGTACTATCGCCGTCATAAGGTCTGTGAGTTTCATGCTAAG
GCTCCGGCGGTTGCGGTGGCCGGAATCCCCCAGCGGTTCTGTCAACAATGCAGCAGGTATTTTGGGACAAAAAAAAAACCCTAA
Protein sequenceShow/hide protein sequence
MATGKADGKRRLNYYEMEEQEEEDEEEEEEEEEEEEDEQQEIDAELGFEGDFNKKKKILTSGGSSNKKSGSGYGGAAAAPPSCQADNCNADLSGSKRYYRRHKVCEFHAK
APAVAVAGIPQRFCQQCSRYFGTKKKP