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HG10021303 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10021303
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr05:7514295..7515410
RNA-Seq ExpressionHG10021303
SyntenyHG10021303
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU28886.1 hypothetical protein TSUD_293380 [Trifolium subterraneum]2.8e-0837.82Show/hide
Query:  GFGGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSRSSN
        GFGGVI +ESG  L+  +G  +G   +L AE  A+Y+GL LA+ +++  L+  S+SL  I ++KG +  Y      I+DIK  +S   ++T  H  R  N
Subjt:  GFGGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSRSSN

Query:  QTAHLLARDGSSGVSFLRL
          A+ LA+ G+S  S L +
Subjt:  QTAHLLARDGSSGVSFLRL

GAU51664.1 hypothetical protein TSUD_268670 [Trifolium subterraneum]1.0e-0737.5Show/hide
Query:  GFGGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSRSSN
        GFGGVI +ESG  L+  +G  +G   +L AE  A+Y+GL LA+ +++  L+  S+ L  I ++KG +  Y   +  I+DIK  +S   ++T  H  R  N
Subjt:  GFGGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSRSSN

Query:  QTAHLLARDGSS
          A+ LA+ G+S
Subjt:  QTAHLLARDGSS

KAF5180544.1 In chloroplast atpase biogenesis protein, partial [Thalictrum thalictroides]1.8e-0733.04Show/hide
Query:  QGIGFGGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSR
        QG G+GG++    G  L        G  ++L  E  A+Y+G++LA+ L + N+LV ++S   I  + G   + W   + + +I      F  VTFRH  R
Subjt:  QGIGFGGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSR

Query:  SSNQTAHLLARDGSS
         +N+ A LLA  G S
Subjt:  SSNQTAHLLARDGSS

KAF7802400.1 uncharacterized protein G2W53_041511 [Senna tora]4.7e-0842.06Show/hide
Query:  GGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSRSSNQT
        G +I    G  LA +     G  SV  AEA AVYEG+ +A+R+S+ N+LV  +S S+I++L G       VS  I+DI    S+FRS +F  V R +N+ 
Subjt:  GGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSRSSNQT

Query:  AHLLARD
        AH+LA D
Subjt:  AHLLARD

XP_030483444.1 uncharacterized protein LOC115700033 [Cannabis sativa]2.3e-0741.28Show/hide
Query:  IGFGGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSRSS
        IGFG +I S    + A L+   +G  SV  AEA A+  GL  A+ + L    V S+SLSL+  L+G T    E+     DIK  LS+F  V+  HVSR+ 
Subjt:  IGFGGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSRSS

Query:  NQTAHLLAR
        N  AH LA+
Subjt:  NQTAHLLAR

TrEMBL top hitse value%identityAlignment
A0A2Z6M8Z8 RNase H domain-containing protein1.3e-0837.82Show/hide
Query:  GFGGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSRSSN
        GFGGVI +ESG  L+  +G  +G   +L AE  A+Y+GL LA+ +++  L+  S+SL  I ++KG +  Y      I+DIK  +S   ++T  H  R  N
Subjt:  GFGGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSRSSN

Query:  QTAHLLARDGSSGVSFLRL
          A+ LA+ G+S  S L +
Subjt:  QTAHLLARDGSSGVSFLRL

A0A2Z6MP33 RNase H domain-containing protein3.3e-0735.71Show/hide
Query:  GFGGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSRSSN
        G+GGVI ++SG  L+  +G  +G   +L AE  A+Y+GL LA+ +++  L+  S+SL  I ++KG +  Y   +  I+DIK  +S   ++T  H  R  +
Subjt:  GFGGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSRSSN

Query:  QTAHLLARDGSS
          A+ LA+ G+S
Subjt:  QTAHLLARDGSS

A0A2Z6P3A9 RNase H domain-containing protein1.5e-0736.13Show/hide
Query:  GFGGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSRSSN
        GFGGVI +ESG  L+  +G  +G   +L AE   +Y+ L LA+ +++  L+  S+SL  I ++KG +  Y   +  I+DIK  +S   ++T  H  R  N
Subjt:  GFGGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSRSSN

Query:  QTAHLLARDGSSGVSFLRL
          A  LA+ G+S  S L +
Subjt:  QTAHLLARDGSSGVSFLRL

A0A2Z6P5H6 Uncharacterized protein5.1e-0837.5Show/hide
Query:  GFGGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSRSSN
        GFGGVI +ESG  L+  +G  +G   +L AE  A+Y+GL LA+ +++  L+  S+ L  I ++KG +  Y   +  I+DIK  +S   ++T  H  R  N
Subjt:  GFGGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSRSSN

Query:  QTAHLLARDGSS
          A+ LA+ G+S
Subjt:  QTAHLLARDGSS

A0A7J6V620 In chloroplast atpase biogenesis protein8.7e-0833.04Show/hide
Query:  QGIGFGGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSR
        QG G+GG++    G  L        G  ++L  E  A+Y+G++LA+ L + N+LV ++S   I  + G   + W   + + +I      F  VTFRH  R
Subjt:  QGIGFGGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKCCLSAFRSVTFRHVSR

Query:  SSNQTAHLLARDGSS
         +N+ A LLA  G S
Subjt:  SSNQTAHLLARDGSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGACTCATAGGAACGACCATAGAACTTGGAGGAGGTCGACTGACCCTATGAGGTACATCCTCATCTGTATTCAGGGGATTGGTTTTGGTGGAGTGATTGGTTCGGA
GTCTGGAGACATTTTGGCTACTCTGGCTGGGCACCGTGAAGGGTTGTGTAGTGTGTTGGGAGCTGAGGCCACTGCTGTGTATGAGGGTCTCAGGCTGGCAGAGAGATTGA
GTCTTTCTAATCTTCTAGTTCTTTCGAACTCTTTATCTCTTATTCAAATGCTTAAAGGGACTACTGGTATCTACTGGGAGGTTTCTAATTATATTGAAGATATCAAATGT
TGCTTATCCGCTTTTCGGTCAGTGACTTTTCGCCATGTGTCAAGATCTTCCAATCAAACGGCACACTTGTTGGCTCGTGATGGTTCGTCGGGTGTGAGTTTTTTACGACT
CAGTTTTTTTTCGGATACGTTGTCCCATTTGTATTCAGGGGATGTTCGTTGTTTGAACAACATTGAGACTATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGACTCATAGGAACGACCATAGAACTTGGAGGAGGTCGACTGACCCTATGAGGTACATCCTCATCTGTATTCAGGGGATTGGTTTTGGTGGAGTGATTGGTTCGGA
GTCTGGAGACATTTTGGCTACTCTGGCTGGGCACCGTGAAGGGTTGTGTAGTGTGTTGGGAGCTGAGGCCACTGCTGTGTATGAGGGTCTCAGGCTGGCAGAGAGATTGA
GTCTTTCTAATCTTCTAGTTCTTTCGAACTCTTTATCTCTTATTCAAATGCTTAAAGGGACTACTGGTATCTACTGGGAGGTTTCTAATTATATTGAAGATATCAAATGT
TGCTTATCCGCTTTTCGGTCAGTGACTTTTCGCCATGTGTCAAGATCTTCCAATCAAACGGCACACTTGTTGGCTCGTGATGGTTCGTCGGGTGTGAGTTTTTTACGACT
CAGTTTTTTTTCGGATACGTTGTCCCATTTGTATTCAGGGGATGTTCGTTGTTTGAACAACATTGAGACTATCTAA
Protein sequenceShow/hide protein sequence
MSTHRNDHRTWRRSTDPMRYILICIQGIGFGGVIGSESGDILATLAGHREGLCSVLGAEATAVYEGLRLAERLSLSNLLVLSNSLSLIQMLKGTTGIYWEVSNYIEDIKC
CLSAFRSVTFRHVSRSSNQTAHLLARDGSSGVSFLRLSFFSDTLSHLYSGDVRCLNNIETI