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HG10021440 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10021440
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr05:9148758..9150418
RNA-Seq ExpressionHG10021440
SyntenyHG10021440
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH07150.1 TatD related DNase [Prunus dulcis]6.2e-2342.47Show/hide
Query:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS
        V+  E KKE +D   V  +  S    W    S  + GGI +LWN  S+ V + M G  S+S++I    G  +WL+GIYGP + +ER SFWEEL DL    
Subjt:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS

Query:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDPPL
         + W +GG+FN+ R+S EK++    TKSM  FN FI E+ + DP L
Subjt:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDPPL

VVA20479.1 Hypothetical predicted protein, partial [Prunus dulcis]6.2e-2342.47Show/hide
Query:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS
        V+  E KKE +D   V  +  S    W    S  + GGI +LWN  S+ V + M G  S+S++I    G  +WL+GIYGP + +ER SFWEEL DL    
Subjt:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS

Query:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDPPL
         + W +GG+FN+ R+S EK++    TKSM  FN FI E+ + DP L
Subjt:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDPPL

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]3.1e-3045.14Show/hide
Query:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS
        V+  E K   I+  F+K++ SSI I WASLD+    GGI++LW+  S    EV+ G  S+S+   L D + +WLTG+Y P K K+R  FW+EL+DL+ L 
Subjt:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS

Query:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDP
           W++G +FNI RWS+E +S  P    MN FN FID + +IDP
Subjt:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDP

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]3.4e-3750Show/hide
Query:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS
        V+ QE K   +D   VK++ S+  I W++LD+     GILILWNDP ++  E++EG  SL++   L DG+ FW++GIYGP+ T+    FW+EL DLS L 
Subjt:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS

Query:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDPPL
         NHWI+ G+FN++RWS+EK++GRP TKSM +FN FI++S++ID PL
Subjt:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDPPL

XP_031739979.1 uncharacterized protein LOC116403332 [Cucumis sativus]4.3e-2439.31Show/hide
Query:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS
        V+ Q+ K   ++ H VK++ SS  + WA+L++    GGILILW + SI V + ++G  S+S+      G+  W+TG+YGP+  + R  FW EL  L  L 
Subjt:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS

Query:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDPP
        N +W +GG+FN+ RW  EK+S    T+SM  F   I+E  ++D P
Subjt:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDPP

TrEMBL top hitse value%identityAlignment
A0A4Y1RS61 TatD related DNase3.0e-2342.47Show/hide
Query:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS
        V+  E KKE +D   V  +  S    W    S  + GGI +LWN  S+ V + M G  S+S++I    G  +WL+GIYGP + +ER SFWEEL DL    
Subjt:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS

Query:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDPPL
         + W +GG+FN+ R+S EK++    TKSM  FN FI E+ + DP L
Subjt:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDPPL

A0A6J1CVN2 uncharacterized protein LOC1110146571.5e-3045.14Show/hide
Query:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS
        V+  E K   I+  F+K++ SSI I WASLD+    GGI++LW+  S    EV+ G  S+S+   L D + +WLTG+Y P K K+R  FW+EL+DL+ L 
Subjt:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS

Query:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDP
           W++G +FNI RWS+E +S  P    MN FN FID + +IDP
Subjt:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDP

A0A6J1E2G6 uncharacterized protein LOC1110254051.6e-3750Show/hide
Query:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS
        V+ QE K   +D   VK++ S+  I W++LD+     GILILWNDP ++  E++EG  SL++   L DG+ FW++GIYGP+ T+    FW+EL DLS L 
Subjt:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS

Query:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDPPL
         NHWI+ G+FN++RWS+EK++GRP TKSM +FN FI++S++ID PL
Subjt:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDPPL

M5VS59 Reverse transcriptase domain-containing protein (Fragment)6.1e-2442.47Show/hide
Query:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS
        V+  E KKE +D   V  +  S    W    S  + GGI +LWN  S+ V + M G  S+S++I    G  +WL+GIYGP + +ER+SFWEEL DL    
Subjt:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS

Query:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDPPL
         + W +GG+FN+ R+S EK++    TKSM  FN FI E+ + DP L
Subjt:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDPPL

M5WPQ5 Reverse transcriptase domain-containing protein1.8e-2342.47Show/hide
Query:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS
        V+  E KKE +D   V  +  S    W    S  + GGI +LWN  S+ V + M G  S+S++I    G  +WL+GIYGP + +ER+SFWEEL DL    
Subjt:  VLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVKEVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLS

Query:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDPPL
         + W +GG+FN+ R+S EK++    TKSM  FN FI E+ + DP L
Subjt:  NNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDPPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCAATTCCAGCTCTGCAATTGAAAAGCAAAAAGAAGCAATCTCAGCTCCAGATATCAAGATAAGCGACGTCATGTTCAGATCTTTCAAGATTAAATATCAACTATC
ACATCCTGAAATGGACATTTACGTGAGTTACAGTGTAACGGAAAGTAATCACTTCAAGACTAGAAGGGTATTATTTCAAGAAATCAAGAAAGAAGACATTGACTGTCATT
TCGTCAAGACTATCAGGAGCTCGATACATATTGTGTGGGCCTCCTTGGACTCACAAAACAAAGTTGGTGGTATTCTAATTCTTTGGAATGACCCTTCGATCCAAGTCAAA
GAGGTCATGGAAGGTACCCACTCCCTATCTTTACAGATTACTCTCATGGATGGTTACTGTTTTTGGCTGACAGGGATTTATGGGCCAACTAAGACCAAAGAAAGATCATC
TTTCTGGGAAGAGCTTTATGATCTATCACACCTCTCCAACAACCATTGGATTATAGGGGGAAATTTTAACATATCAAGATGGTCGTACGAGAAAACAAGTGGCAGGCCAA
GAACTAAAAGTATGAATATGTTCAACAAGTTCATTGATGAAAGTGCTGTGATCGATCCTCCCCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCAATTCCAGCTCTGCAATTGAAAAGCAAAAAGAAGCAATCTCAGCTCCAGATATCAAGATAAGCGACGTCATGTTCAGATCTTTCAAGATTAAATATCAACTATC
ACATCCTGAAATGGACATTTACGTGAGTTACAGTGTAACGGAAAGTAATCACTTCAAGACTAGAAGGGTATTATTTCAAGAAATCAAGAAAGAAGACATTGACTGTCATT
TCGTCAAGACTATCAGGAGCTCGATACATATTGTGTGGGCCTCCTTGGACTCACAAAACAAAGTTGGTGGTATTCTAATTCTTTGGAATGACCCTTCGATCCAAGTCAAA
GAGGTCATGGAAGGTACCCACTCCCTATCTTTACAGATTACTCTCATGGATGGTTACTGTTTTTGGCTGACAGGGATTTATGGGCCAACTAAGACCAAAGAAAGATCATC
TTTCTGGGAAGAGCTTTATGATCTATCACACCTCTCCAACAACCATTGGATTATAGGGGGAAATTTTAACATATCAAGATGGTCGTACGAGAAAACAAGTGGCAGGCCAA
GAACTAAAAGTATGAATATGTTCAACAAGTTCATTGATGAAAGTGCTGTGATCGATCCTCCCCTCTAA
Protein sequenceShow/hide protein sequence
MSNSSSAIEKQKEAISAPDIKISDVMFRSFKIKYQLSHPEMDIYVSYSVTESNHFKTRRVLFQEIKKEDIDCHFVKTIRSSIHIVWASLDSQNKVGGILILWNDPSIQVK
EVMEGTHSLSLQITLMDGYCFWLTGIYGPTKTKERSSFWEELYDLSHLSNNHWIIGGNFNISRWSYEKTSGRPRTKSMNMFNKFIDESAVIDPPL