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HG10021477 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10021477
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase
Genome locationChr05:9746245..9752329
RNA-Seq ExpressionHG10021477
SyntenyHG10021477
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3453752.1 reverse transcriptase [Gossypium australe]1.8e-1547.9Show/hide
Query:  KLLEKEEVVADIEDDDINMKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISKTKMPMKM
        K+LE  E +   E     + E+L+  F   +V  A K M  TKA  LDGL ALFFQ+YW IMG EV+D  L +LNG + +D  N T I LI KT  P  +
Subjt:  KLLEKEEVVADIEDDDINMKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISKTKMPMKM

Query:  SDFRSLSLYSVIYKLVAKT
         +FR +SL SV+YK+VAKT
Subjt:  SDFRSLSLYSVIYKLVAKT

ONI29413.1 hypothetical protein PRUPE_1G197300 [Prunus persica]6.3e-1645.19Show/hide
Query:  INMKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISKTKMPMKMSDFRSLSLYSVIYKLV
        +NM E L++ F+ +++E A   M  TKA  ++G+ ALF+Q+YW I+GD V D  L +LNG  ++ D N+T I LI K   P +++DFR +SL +V+YKL+
Subjt:  INMKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISKTKMPMKMSDFRSLSLYSVIYKLV

Query:  AKTF
        AK+F
Subjt:  AKTF

XP_023881891.1 uncharacterized protein LOC111994244 [Quercus suber]1.8e-1544Show/hide
Query:  MKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISKTKMPMKMSDFRSLSLYSVIYKLVAK
        M  +L++ F+  ++E A   M+ TKA   DG+ A+FFQKYW+I+G++++ + L +LN   ++ +IN T+I L+ K K P KMSDFR +SL +V+YKL++K
Subjt:  MKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISKTKMPMKMSDFRSLSLYSVIYKLVAK

XP_023913142.1 uncharacterized protein LOC112024740 [Quercus suber]3.7e-1648.51Show/hide
Query:  NMKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISKTKMPMKMSDFRSLSLYSVIYKLVA
        NMKE L K ++G +V+ A   M  TKA   DG+ ALF+Q++W I+G++V    L  LN    L +IN THI LI K K P KM+DFR +SL +VIYK+++
Subjt:  NMKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISKTKMPMKMSDFRSLSLYSVIYKLVA

Query:  K
        K
Subjt:  K

XP_030939512.1 uncharacterized protein LOC115964316 [Quercus lobata]1.1e-1549Show/hide
Query:  MKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISKTKMPMKMSDFRSLSLYSVIYKLVAK
        M +TL   FS  +V+ A   M  TKA   DG+ ALF+Q++W ++GD V+D  L  LN    L DIN+T+I LI K K P KMSDFR +SL +VIYK+++K
Subjt:  MKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISKTKMPMKMSDFRSLSLYSVIYKLVAK

TrEMBL top hitse value%identityAlignment
A0A5B6UC75 Reverse transcriptase8.8e-1647.9Show/hide
Query:  KLLEKEEVVADIEDDDINMKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISKTKMPMKM
        K+LE  E +   E     + E+L+  F   +V  A K M  TKA  LDGL ALFFQ+YW IMG EV+D  L +LNG + +D  N T I LI KT  P  +
Subjt:  KLLEKEEVVADIEDDDINMKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISKTKMPMKM

Query:  SDFRSLSLYSVIYKLVAKT
         +FR +SL SV+YK+VAKT
Subjt:  SDFRSLSLYSVIYKLVAKT

A0A5B6UVI9 Reverse transcriptase1.5e-1540Show/hide
Query:  GKYLEKLKLLEKEEVVADIEDDDINMKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISK
        G++   L L+EK  + +D+ D+       L+K FS  ++    K M   KA  +DG   LFFQKYWDI+G ++   +L++L G  N+D+IN THI LI K
Subjt:  GKYLEKLKLLEKEEVVADIEDDDINMKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISK

Query:  TKMPMKMSDFRSLSLYSVIYKLVAK
           P  +S FR + L ++IYK++AK
Subjt:  TKMPMKMSDFRSLSLYSVIYKLVAK

A0A5B6V147 Reverse transcriptase1.2e-1550.49Show/hide
Query:  INMKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISKTKMPMKMSDFRSLSLYSVIYKLV
        I   E L   FS  +VE A K M  TKA  LDG  A+FFQKYW I+  EV+D  L +LN  + +D  N T+I LI K + P  + DFR +SL SV+YKLV
Subjt:  INMKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISKTKMPMKMSDFRSLSLYSVIYKLV

Query:  AKT
        AKT
Subjt:  AKT

A0A7N2MR00 Uncharacterized protein3.0e-1647Show/hide
Query:  MKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISKTKMPMKMSDFRSLSLYSVIYKLVAK
        M + L+  F+  +V  A K M+ TKA   DG+ A+FFQKYWD++G+++  + L++LN   ++ DIN T+I LI K   P+KMSDFR +SL +V+YKLV+K
Subjt:  MKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISKTKMPMKMSDFRSLSLYSVIYKLVAK

M5XK99 Uncharacterized protein3.0e-1645.19Show/hide
Query:  INMKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISKTKMPMKMSDFRSLSLYSVIYKLV
        +NM E L++ F+ +++E A   M  TKA  ++G+ ALF+Q+YW I+GD V D  L +LNG  ++ D N+T I LI K   P +++DFR +SL +V+YKL+
Subjt:  INMKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISKTKMPMKMSDFRSLSLYSVIYKLV

Query:  AKTF
        AK+F
Subjt:  AKTF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGAGGATTTTCTTGGCAAGTATTTGGAGAAATTGAAACTATTAGAGAAAGAAGAGGTTGTTGCCGATATTGAGGATGATGATATCAACATGAAAGAAACTTTGGT
GAAAGGCTTTAGTGGAGTAAAGGTGGAATGTGCCCCAAAAGTTATGAATCGTACGAAGGCTTCAAATCTGGATGGATTGAAAGCCTTGTTCTTTCAAAAGTACTGGGACA
TTATGGGAGATGAGGTTATGGATATTTTCCTGAGCATGTTAAATGGACGGGAGAATTTAGATGATATTAATAACACCCATATATTTCTTATATCGAAAACTAAGATGCCC
ATGAAAATGTCAGATTTTAGATCACTTAGTCTTTATAGTGTGATTTACAAATTGGTGGCAAAGACCTTCAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGGAGGATTTTCTTGGCAAGTATTTGGAGAAATTGAAACTATTAGAGAAAGAAGAGGTTGTTGCCGATATTGAGGATGATGATATCAACATGAAAGAAACTTTGGT
GAAAGGCTTTAGTGGAGTAAAGGTGGAATGTGCCCCAAAAGTTATGAATCGTACGAAGGCTTCAAATCTGGATGGATTGAAAGCCTTGTTCTTTCAAAAGTACTGGGACA
TTATGGGAGATGAGGTTATGGATATTTTCCTGAGCATGTTAAATGGACGGGAGAATTTAGATGATATTAATAACACCCATATATTTCTTATATCGAAAACTAAGATGCCC
ATGAAAATGTCAGATTTTAGATCACTTAGTCTTTATAGTGTGATTTACAAATTGGTGGCAAAGACCTTCAAATAG
Protein sequenceShow/hide protein sequence
MGEDFLGKYLEKLKLLEKEEVVADIEDDDINMKETLVKGFSGVKVECAPKVMNRTKASNLDGLKALFFQKYWDIMGDEVMDIFLSMLNGRENLDDINNTHIFLISKTKMP
MKMSDFRSLSLYSVIYKLVAKTFK