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HG10021519 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10021519
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRibonuclease H2 subunit C isoform X2
Genome locationChr05:10553036..10555973
RNA-Seq ExpressionHG10021519
SyntenyHG10021519
Gene Ontology termsGO:0006401 - RNA catabolic process (biological process)
GO:0032299 - ribonuclease H2 complex (cellular component)
InterPro domainsIPR013924 - Ribonuclease H2, subunit C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583796.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]6.9e-5568.67Show/hide
Query:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-------------------------------GYVLGKKSLGKREDS
        M++E ERK EVIVDFDFG DS  +DLSGKVHQLPCA+KFDGPCSVSQYFKPKST                               GYV+G+KS GKR+ S
Subjt:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-------------------------------GYVLGKKSLGKREDS

Query:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
        E+ QDSS WQVKAKFENITYWNHDTLP+QDDTFQRSFHWLTVA+ALHKPVTAEDLA+AS ALKNMS
Subjt:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

KAG7019419.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. argyrosperma]4.1e-5569.51Show/hide
Query:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-----------------------------GYVLGKKSLGKREDSEQ
        M++E ERK EVIVDFDFG DS  +DLSGKVHQLPCA+KFDGPCSVSQYFKPKST                             GYV+G+KS GKR+ SE+
Subjt:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-----------------------------GYVLGKKSLGKREDSEQ

Query:  CQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
         QDSS WQVKAKFENITYWNHDTLP+QDDTFQRSFHWLTVA+ALHKPVTAEDLA+AS ALKNMS
Subjt:  CQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

XP_022927160.1 uncharacterized protein C12B10.15c [Cucurbita moschata]6.9e-5568.67Show/hide
Query:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-------------------------------GYVLGKKSLGKREDS
        M++E ERK EVIVDFDFG DS  +DLSGKVHQLPCA+KFDGPCSVSQYFKPKST                               GYV+G+KS GKR+ S
Subjt:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-------------------------------GYVLGKKSLGKREDS

Query:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
        E+ QDSS WQVKAKFENITYWNHDTLP+QDDTFQRSFHWLTVA+ALHKPVTAEDLA+AS ALKNMS
Subjt:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

XP_023001622.1 uncharacterized protein C12B10.15c [Cucurbita maxima]2.4e-5569.28Show/hide
Query:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-------------------------------GYVLGKKSLGKREDS
        M++E ERK EVIVDFDFG DS  +DLSGKVHQLPCA+KFDGPCSVSQYFKPKST                               GYV+G+KSL KR+ S
Subjt:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-------------------------------GYVLGKKSLGKREDS

Query:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
        E+ QDSS WQVKAKFENITYWNHDTLP+QDDTFQRSFHWLTVA+ALHKPVTAEDLA ASTALKNMS
Subjt:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

XP_038893586.1 uncharacterized protein C12B10.15c [Benincasa hispida]1.2e-5975.3Show/hide
Query:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-------------------------------GYVLGKKSLGKREDS
        MNAE ERKGEVIVDFDF  DSV LDLSGKVHQLPCAIKFDGPCSVSQYFKPKST                               GYVLGKKSLGKR+ S
Subjt:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-------------------------------GYVLGKKSLGKREDS

Query:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
        EQ Q+SSPWQVKAKF NITYWNHDTLPSQDDTFQRSFHWLTVA+ALHKPVTAEDLASASTALKNMS
Subjt:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

TrEMBL top hitse value%identityAlignment
A0A0A0M1A2 Uncharacterized protein2.7e-5267.26Show/hide
Query:  MNAEIERKGEVIV--DFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-------------------------------GYVLGKKSLGKRE
        MN + ERKGEVIV  DFDFG D   LD+SGKVHQLPC IKFDGPC VS YFKPKST                               GYVLGKKS    +
Subjt:  MNAEIERKGEVIV--DFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-------------------------------GYVLGKKSLGKRE

Query:  DSEQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
         SEQC DSSPWQVKAKF+NITYWNHDTLPSQDDTFQR+FHWLTVA+ALHKPVTAEDLASASTALKN+S
Subjt:  DSEQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

A0A1S3C9A8 uncharacterized protein C12B10.15c3.1e-5366.07Show/hide
Query:  MNAEIERKGEVIV--DFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-------------------------------GYVLGKKSLGKRE
        MNA+  RKGE  V  DFDFG D   LDLSGK+HQLPC IKFDGPC VS YFKPKST                               GYVLGKKSLGK +
Subjt:  MNAEIERKGEVIV--DFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-------------------------------GYVLGKKSLGKRE

Query:  DSEQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
         S+QC DSSPWQVKAKF+NITYWNHDTLPSQDDTFQR+FHWLTVA+ALHKPVTAEDLASAS AL N+S
Subjt:  DSEQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

A0A5A7TIT8 Ribonuclease H2 subunit C isoform X23.1e-5366.07Show/hide
Query:  MNAEIERKGEVIV--DFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-------------------------------GYVLGKKSLGKRE
        MNA+  RKGE  V  DFDFG D   LDLSGK+HQLPC IKFDGPC VS YFKPKST                               GYVLGKKSLGK +
Subjt:  MNAEIERKGEVIV--DFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-------------------------------GYVLGKKSLGKRE

Query:  DSEQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
         S+QC DSSPWQVKAKF+NITYWNHDTLPSQDDTFQR+FHWLTVA+ALHKPVTAEDLASAS AL N+S
Subjt:  DSEQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

A0A6J1EN41 uncharacterized protein C12B10.15c3.3e-5568.67Show/hide
Query:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-------------------------------GYVLGKKSLGKREDS
        M++E ERK EVIVDFDFG DS  +DLSGKVHQLPCA+KFDGPCSVSQYFKPKST                               GYV+G+KS GKR+ S
Subjt:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-------------------------------GYVLGKKSLGKREDS

Query:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
        E+ QDSS WQVKAKFENITYWNHDTLP+QDDTFQRSFHWLTVA+ALHKPVTAEDLA+AS ALKNMS
Subjt:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

A0A6J1KH29 uncharacterized protein C12B10.15c1.1e-5569.28Show/hide
Query:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-------------------------------GYVLGKKSLGKREDS
        M++E ERK EVIVDFDFG DS  +DLSGKVHQLPCA+KFDGPCSVSQYFKPKST                               GYV+G+KSL KR+ S
Subjt:  MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST-------------------------------GYVLGKKSLGKREDS

Query:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
        E+ QDSS WQVKAKFENITYWNHDTLP+QDDTFQRSFHWLTVA+ALHKPVTAEDLA ASTALKNMS
Subjt:  EQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G39440.1 CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).3.3e-3145.86Show/hide
Query:  VDFDFGIDSVPL-DLSGKVHQLPCAIKFDGPCSVSQYFKPKS-------------------------------TGYVLGKKS----LGKREDSEQCQDSS
        +DF    D   + DLS +VHQLPC I+FDGP  VS YFKPKS                               +G+VL + S     GKR+ S   +D+ 
Subjt:  VDFDFGIDSVPL-DLSGKVHQLPCAIKFDGPCSVSQYFKPKS-------------------------------TGYVLGKKS----LGKREDSEQCQDSS

Query:  PWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKN
         W+VKAKF N+TYWNHD+LPS+DDTF RSFHW ++A+ALHKPV  EDL + S   KN
Subjt:  PWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCTGAAATCGAGAGGAAAGGGGAAGTAATCGTGGATTTTGATTTTGGGATTGACTCTGTGCCTTTGGATCTCAGTGGTAAAGTCCATCAGCTTCCCTGTGCCAT
TAAATTCGATGGTCCTTGCTCTGTTTCTCAGTATTTTAAACCCAAATCCACTGGCTATGTGCTAGGGAAGAAGAGTCTTGGAAAGAGGGAAGATTCTGAACAGTGTCAGG
ACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGAAAATATTACATATTGGAACCATGACACCCTACCATCACAAGACGATACGTTCCAACGTTCTTTTCACTGGCTGACC
GTTGCAAAAGCATTGCACAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGCTGAAATCGAGAGGAAAGGGGAAGTAATCGTGGATTTTGATTTTGGGATTGACTCTGTGCCTTTGGATCTCAGTGGTAAAGTCCATCAGCTTCCCTGTGCCAT
TAAATTCGATGGTCCTTGCTCTGTTTCTCAGTATTTTAAACCCAAATCCACTGGCTATGTGCTAGGGAAGAAGAGTCTTGGAAAGAGGGAAGATTCTGAACAGTGTCAGG
ACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGAAAATATTACATATTGGAACCATGACACCCTACCATCACAAGACGATACGTTCCAACGTTCTTTTCACTGGCTGACC
GTTGCAAAAGCATTGCACAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGA
Protein sequenceShow/hide protein sequence
MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGYVLGKKSLGKREDSEQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLT
VAKALHKPVTAEDLASASTALKNMS