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HG10021536 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10021536
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr05:10951773..10954418
RNA-Seq ExpressionHG10021536
SyntenyHG10021536
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER41007.1 pentatricopeptide repeat-containing protein [Striga asiatica]1.1e-0568.75Show/hide
Query:  VPPLEQRVRTASASLGQAVATRHCARDRFRCRQADRRAGPSGSRLWHS
        VPPLEQRVRTAS S GQA ATRH ARDR R R A  R  P+G R W S
Subjt:  VPPLEQRVRTASASLGQAVATRHCARDRFRCRQADRRAGPSGSRLWHS
TrEMBL top hitse value%identityAlignment
A0A5A7Q9B3 Pentatricopeptide repeat-containing protein5.4e-0668.75Show/hide
Query:  VPPLEQRVRTASASLGQAVATRHCARDRFRCRQADRRAGPSGSRLWHS
        VPPLEQRVRTAS S GQA ATRH ARDR R R A  R  P+G R W S
Subjt:  VPPLEQRVRTASASLGQAVATRHCARDRFRCRQADRRAGPSGSRLWHS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATCATCTCTACCACGATTGTTGTCATCTGTAGTGGTTCCGCCGCTGGAGCAGAGGGTTCGTACCGCCTCCGCCTCGCTAGGGCAAGCCGTCGCCACCAGACACTG
TGCAAGAGATCGGTTCAGGTGTCGGCAGGCCGACCGCCGCGCCGGACCTTCTGGAAGTCGCTTGTGGCACTCTCGGAGAGCCTGCTCCAGCCGCTCGCAGCCGCCGTCAC
CACATATAGGAGATTCGCCGGTTGGTGACATCTCTTTCTTTGCTTTGTGGCAATGGGGTCCCACACCATTTGGGACGGAAGAGAAGGTTTCTGTTTCTGTATATTTGCTT
TCAGAAAACAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCATCATCTCTACCACGATTGTTGTCATCTGTAGTGGTTCCGCCGCTGGAGCAGAGGGTTCGTACCGCCTCCGCCTCGCTAGGGCAAGCCGTCGCCACCAGACACTG
TGCAAGAGATCGGTTCAGGTGTCGGCAGGCCGACCGCCGCGCCGGACCTTCTGGAAGTCGCTTGTGGCACTCTCGGAGAGCCTGCTCCAGCCGCTCGCAGCCGCCGTCAC
CACATATAGGAGATTCGCCGGTTGGTGACATCTCTTTCTTTGCTTTGTGGCAATGGGGTCCCACACCATTTGGGACGGAAGAGAAGGTTTCTGTTTCTGTATATTTGCTT
TCAGAAAACAAATGA
Protein sequenceShow/hide protein sequence
MPSSLPRLLSSVVVPPLEQRVRTASASLGQAVATRHCARDRFRCRQADRRAGPSGSRLWHSRRACSSRSQPPSPHIGDSPVGDISFFALWQWGPTPFGTEEKVSVSVYLL
SENK