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HG10021561 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10021561
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr05:11425158..11433836
RNA-Seq ExpressionHG10021561
SyntenyHG10021561
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN69385.1 hypothetical protein VITISV_000856 [Vitis vinifera]3.5e-1335.51Show/hide
Query:  INRIKHYNQINERDKIDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMATNAYESTGNTNHKAARLIIIGFTGILKNWWE
        INRI H  +   + + ++Y   + P++ +E+R++ ++ ++Y G+ IY WNIDG++ + + +I  EM+MA+  Y+  GN++H     ++ GFTG LK WW+
Subjt:  INRIKHYNQINERDKIDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMATNAYESTGNTNHKAARLIIIGFTGILKNWWE

Query:  NGLNAQG
        N L  +G
Subjt:  NGLNAQG

FAA01221.1 TPA: polyprotein [Oryza sativa Japonica Group]3.5e-1333.33Show/hide
Query:  ESLIEEFKI-LQTDESSSNINDINRIKHYNQINERDK--------IDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMAT
        E L+ E  + L   + + NIN+I+  + Y+ +N+  K         ++Y + +  ++ FE+  +    T Y+G+ I  WN+DG T+Y I+ + ++M+M  
Subjt:  ESLIEEFKI-LQTDESSSNINDINRIKHYNQINERDK--------IDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMAT

Query:  NAYESTGNTNHKAARLIIIGFTGILKNWWENGLNAQGR
        NA  + GN   +AA +I+IGF+G LK WW N LN   R
Subjt:  NAYESTGNTNHKAARLIIIGFTGILKNWWENGLNAQGR

KAF5803680.1 putative transcription factor interactor and regulator CCHC(Zn) family [Helianthus annuus]9.1e-1432.33Show/hide
Query:  ESDVESLIEEFKILQTDESSSNINDINR--IKHYNQINERDKIDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMATNAY
        + +++S+ E+F   Q ++S   I   N    K+       +  ++Y + + P++ FE+R+  ++  +Y G S+Y WNI+G T++ I ++  EM+MA NAY
Subjt:  ESDVESLIEEFKILQTDESSSNINDINR--IKHYNQINERDKIDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMATNAY

Query:  ESTGNTNHKAARLIIIGFTGILKNWWENGLNAQ
        ++ GN   +   +I+ GFTGILK WW+  L  +
Subjt:  ESTGNTNHKAARLIIIGFTGILKNWWENGLNAQ

XP_023520850.1 uncharacterized protein LOC111784362 [Cucurbita pepo subsp. pepo]2.2e-1540.54Show/hide
Query:  NDINRIKHYNQINERDKIDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMATNAYESTGN-TNHKAARLIIIGFTGILKN
        N I RI   +Q N  ++ +WY Q S P++ FE++        Y G +IY WNIDG++ YLI ++ NEM+MA  AY+  G+ ++H+ A++++ GFTG LK+
Subjt:  NDINRIKHYNQINERDKIDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMATNAYESTGN-TNHKAARLIIIGFTGILKN

Query:  WWENGLNAQGR
        WW+  L+   R
Subjt:  WWENGLNAQGR

XP_033139453.1 uncharacterized protein LOC117131412 isoform X1 [Brassica rapa]2.8e-1538.14Show/hide
Query:  ILQTDESSSNINDINRIKHYNQINERDKIDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMATNAYESTGNTNHKAARLI
        I  + +S ++I +INRIK+      + +  +Y + + P++ FE+ +K+  + +Y GESIY WNIDG ++Y + ++  EM+MAT AY+  GN + ++  L+
Subjt:  ILQTDESSSNINDINRIKHYNQINERDKIDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMATNAYESTGNTNHKAARLI

Query:  IIGFTGILKNWWENGLNA
        + GFTG L+ WW+N L+A
Subjt:  IIGFTGILKNWWENGLNA

TrEMBL top hitse value%identityAlignment
A0A1J3J6U2 Movement protein (Fragment)8.0e-1640.16Show/hide
Query:  IEEFKILQTDESSSNINDINRIKHYNQINERDKIDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMATNAYESTGNTNHK
        I+E +      S S+  +INRIKH N    R    +Y + + P++ FE+ +K+  N  Y GE IY WNIDG ++Y I  +  EM MA  A+++ GNT+ +
Subjt:  IEEFKILQTDESSSNINDINRIKHYNQINERDKIDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMATNAYESTGNTNHK

Query:  AARLIIIGFTGILKNWWENGLN
        A  +I+ GFTG L+ WW+N L+
Subjt:  AARLIIIGFTGILKNWWENGLN

A0A224QT09 Polyprotein1.7e-1333.33Show/hide
Query:  ESLIEEFKI-LQTDESSSNINDINRIKHYNQINERDK--------IDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMAT
        E L+ E  + L   + + NIN+I+  + Y+ +N+  K         ++Y + +  ++ FE+  +    T Y+G+ I  WN+DG T+Y I+ + ++M+M  
Subjt:  ESLIEEFKI-LQTDESSSNINDINRIKHYNQINERDK--------IDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMAT

Query:  NAYESTGNTNHKAARLIIIGFTGILKNWWENGLNAQGR
        NA  + GN   +AA +I+IGF+G LK WW N LN   R
Subjt:  NAYESTGNTNHKAARLIIIGFTGILKNWWENGLNAQGR

A0A251VET5 Putative reverse transcriptase domain, Zinc finger, CCHC-type, Aspartic peptidase domain protein3.4e-1432.33Show/hide
Query:  ESDVESLIEEFKILQTDESSSNINDINR--IKHYNQINERDKIDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMATNAY
        + +++S+ E+F   Q ++S + I   N    K+       +  ++Y + + P++ FE+R+  ++  +Y G S+Y WNI+G T++ I ++  EM+MA NAY
Subjt:  ESDVESLIEEFKILQTDESSSNINDINR--IKHYNQINERDKIDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMATNAY

Query:  ESTGNTNHKAARLIIIGFTGILKNWWENGLNAQ
        ++ GN   +   +I+ GFTGILK WW+  L  +
Subjt:  ESTGNTNHKAARLIIIGFTGILKNWWENGLNAQ

A5ATW3 Uncharacterized protein1.7e-1335.51Show/hide
Query:  INRIKHYNQINERDKIDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMATNAYESTGNTNHKAARLIIIGFTGILKNWWE
        INRI H  +   + + ++Y   + P++ +E+R++ ++ ++Y G+ IY WNIDG++ + + +I  EM+MA+  Y+  GN++H     ++ GFTG LK WW+
Subjt:  INRIKHYNQINERDKIDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMATNAYESTGNTNHKAARLIIIGFTGILKNWWE

Query:  NGLNAQG
        N L  +G
Subjt:  NGLNAQG

I1QTQ4 CCHC-type domain-containing protein1.7e-1333.33Show/hide
Query:  ESLIEEFKI-LQTDESSSNINDINRIKHYNQINERDK--------IDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMAT
        E L+ E  + L   + + NIN+I+  + Y+ +N+  K         ++Y + +  ++ FE+  +    T Y+G+ I  WN+DG T+Y I+ + ++M+M  
Subjt:  ESLIEEFKI-LQTDESSSNINDINRIKHYNQINERDK--------IDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLIYDIPNEMLMAT

Query:  NAYESTGNTNHKAARLIIIGFTGILKNWWENGLNAQGR
        NA  + GN   +AA +I+IGF+G LK WW N LN   R
Subjt:  NAYESTGNTNHKAARLIIIGFTGILKNWWENGLNAQGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGACTTCGAAATCTAACCCACACCACCAATGGAACACGAACGAAGTGCGTTGGACGGAGTAGCAACAGACACGAAAGTGATGTTGAATCACTTATTGAAGAATT
CAAAATTCTTCAAACTGATGAATCATCTTCAAACATAAATGATATCAACAGAATAAAACACTATAATCAAATAAATGAAAGAGATAAGATTGATTGGTACCATCAACTTT
CAATCCCCAACATGGGATTTGAACAAAGAAATAAATTTATTAAAAATACTCAATACCATGGAGAATCCATCTACGTTTGGAACATAGATGGAATGACAAAATATCTAATA
TACGATATTCCTAATGAAATGCTTATGGCAACAAATGCCTATGAATCAACTGGAAATACCAACCATAAAGCTGCAAGATTAATAATAATAGGATTTACTGGAATATTAAA
GAATTGGTGGGAAAATGGCCTTAATGCTCAAGGTAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGACTTCGAAATCTAACCCACACCACCAATGGAACACGAACGAAGTGCGTTGGACGGAGTAGCAACAGACACGAAAGTGATGTTGAATCACTTATTGAAGAATT
CAAAATTCTTCAAACTGATGAATCATCTTCAAACATAAATGATATCAACAGAATAAAACACTATAATCAAATAAATGAAAGAGATAAGATTGATTGGTACCATCAACTTT
CAATCCCCAACATGGGATTTGAACAAAGAAATAAATTTATTAAAAATACTCAATACCATGGAGAATCCATCTACGTTTGGAACATAGATGGAATGACAAAATATCTAATA
TACGATATTCCTAATGAAATGCTTATGGCAACAAATGCCTATGAATCAACTGGAAATACCAACCATAAAGCTGCAAGATTAATAATAATAGGATTTACTGGAATATTAAA
GAATTGGTGGGAAAATGGCCTTAATGCTCAAGGTAGATAA
Protein sequenceShow/hide protein sequence
MDGLRNLTHTTNGTRTKCVGRSSNRHESDVESLIEEFKILQTDESSSNINDINRIKHYNQINERDKIDWYHQLSIPNMGFEQRNKFIKNTQYHGESIYVWNIDGMTKYLI
YDIPNEMLMATNAYESTGNTNHKAARLIIIGFTGILKNWWENGLNAQGR