; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10021706 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10021706
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionGag-pol polyprotein
Genome locationChr05:14461591..14463514
RNA-Seq ExpressionHG10021706
SyntenyHG10021706
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025487.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.2e-0938.39Show/hide
Query:  KGTEQNVATSKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGIN
        + +E+N      ++FE++     +D+ A +IQKERI+ L+E+N RL+S IS LK +LK  + + + M KFV+M+NS T +L +IL+SG+  S K G+G +
Subjt:  KGTEQNVATSKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGIN

Query:  QHGKQFYKGTQT
           +     T+T
Subjt:  QHGKQFYKGTQT

KAA0050618.1 gag-pol polyprotein [Cucumis melo var. makuwa]7.2e-1042.57Show/hide
Query:  KNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKGT
        KNL+FEE+  Q  +DS A +IQKER + L+E+N RL+S IS LK +LK  + E +   K V+M+NS T +L +IL+SG    +K G+G +   ++    T
Subjt:  KNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKGT

Query:  Q
        +
Subjt:  Q

KAA0053131.1 gag-pol polyprotein [Cucumis melo var. makuwa]4.7e-0941.58Show/hide
Query:  KNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKGT
        KNL+FEE+     +DS A++IQKERI+ L+E+N RL+S I  LK +LK  + E +   K V+M+NS T +L +IL+SG+   +K G+G +   ++    T
Subjt:  KNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKGT

Query:  Q
        +
Subjt:  Q

KAA0059924.1 Peptidase aspartic, catalytic [Cucumis melo var. makuwa]4.2e-1041.51Show/hide
Query:  SKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKG
        +K+LSFEE+   R +D  A +IQKERI+ L+E+N RL+S I+ LK +LK  + E +   K+V M+NS T +L  IL SG+  S K G+G +         
Subjt:  SKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKG

Query:  TQTFGC
        ++  GC
Subjt:  TQTFGC

TYK00378.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.2e-0938.39Show/hide
Query:  KGTEQNVATSKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGIN
        + +E+N      ++FE++     +D+ A +IQKERI+ L+E+N RL+S IS LK +LK  + + + M KFV+M+NS T +L +IL+SG+  S K G+G +
Subjt:  KGTEQNVATSKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGIN

Query:  QHGKQFYKGTQT
           +     T+T
Subjt:  QHGKQFYKGTQT

TrEMBL top hitse value%identityAlignment
A0A5A7SLA0 Gag-pol polyprotein6.0e-1038.39Show/hide
Query:  KGTEQNVATSKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGIN
        + +E+N      ++FE++     +D+ A +IQKERI+ L+E+N RL+S IS LK +LK  + + + M KFV+M+NS T +L +IL+SG+  S K G+G +
Subjt:  KGTEQNVATSKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGIN

Query:  QHGKQFYKGTQT
           +     T+T
Subjt:  QHGKQFYKGTQT

A0A5A7U5R6 Gag-pol polyprotein3.5e-1042.57Show/hide
Query:  KNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKGT
        KNL+FEE+  Q  +DS A +IQKER + L+E+N RL+S IS LK +LK  + E +   K V+M+NS T +L +IL+SG    +K G+G +   ++    T
Subjt:  KNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKGT

Query:  Q
        +
Subjt:  Q

A0A5A7UHW4 Gag-pol polyprotein2.3e-0941.58Show/hide
Query:  KNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKGT
        KNL+FEE+     +DS A++IQKERI+ L+E+N RL+S I  LK +LK  + E +   K V+M+NS T +L +IL+SG+   +K G+G +   ++    T
Subjt:  KNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKGT

Query:  Q
        +
Subjt:  Q

A0A5A7UY03 Peptidase aspartic, catalytic2.0e-1041.51Show/hide
Query:  SKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKG
        +K+LSFEE+   R +D  A +IQKERI+ L+E+N RL+S I+ LK +LK  + E +   K+V M+NS T +L  IL SG+  S K G+G +         
Subjt:  SKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKG

Query:  TQTFGC
        ++  GC
Subjt:  TQTFGC

A0A5D3BMP7 Gag-pol polyprotein6.0e-1038.39Show/hide
Query:  KGTEQNVATSKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGIN
        + +E+N      ++FE++     +D+ A +IQKERI+ L+E+N RL+S IS LK +LK  + + + M KFV+M+NS T +L +IL+SG+  S K G+G +
Subjt:  KGTEQNVATSKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGIN

Query:  QHGKQFYKGTQT
           +     T+T
Subjt:  QHGKQFYKGTQT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTTTTGTGGCAGGAAAGGAACAGAACAAAATGTAGCTACCTCTAAAAACCTATCCTTCGAAGAAGTCCATCAACAGCGAATAGATGATTCTCATGCCTTGTCAAT
TCAAAAGGAGAGAATTGAGAAACTCATCGAAGATAATCATCGTCTTCTGAGCACCATTTCTGAGTTGAAGAAAGAGTTGAAAGGTTCAAAAGTTGAACTTGAAACAATGT
CAAAGTTTGTTCGCATGATGAACTCAAGCACTAATGATCTTCACATAATTTTGTCTTCTGGCAAGCAGGTTTCTGATAAGCTTGGCATTGGGATCAATCAGCATGGGAAG
CAGTTCTACAAAGGTACTCAGACATTTGGTTGTAAAATGGTTAGTAAATCAGTAAAGAAGATAAAGGCCTTCAAGAAGGGTGGTTCTCCATCAAGAGACAATGTCTATGG
TGTTCGAGTGAGGGGTTTTTCTTTCTCTTTTAGTGATGCCTTTGCTACAAATTCATTTGTCAATAAAAAGAGAATTGAGCCTATGATACATAAGAAAACTAAGAAGGAAA
GGTGTGTTGTTAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTATTTTTGTGGCAGGAAAGGAACAGAACAAAATGTAGCTACCTCTAAAAACCTATCCTTCGAAGAAGTCCATCAACAGCGAATAGATGATTCTCATGCCTTGTCAAT
TCAAAAGGAGAGAATTGAGAAACTCATCGAAGATAATCATCGTCTTCTGAGCACCATTTCTGAGTTGAAGAAAGAGTTGAAAGGTTCAAAAGTTGAACTTGAAACAATGT
CAAAGTTTGTTCGCATGATGAACTCAAGCACTAATGATCTTCACATAATTTTGTCTTCTGGCAAGCAGGTTTCTGATAAGCTTGGCATTGGGATCAATCAGCATGGGAAG
CAGTTCTACAAAGGTACTCAGACATTTGGTTGTAAAATGGTTAGTAAATCAGTAAAGAAGATAAAGGCCTTCAAGAAGGGTGGTTCTCCATCAAGAGACAATGTCTATGG
TGTTCGAGTGAGGGGTTTTTCTTTCTCTTTTAGTGATGCCTTTGCTACAAATTCATTTGTCAATAAAAAGAGAATTGAGCCTATGATACATAAGAAAACTAAGAAGGAAA
GGTGTGTTGTTAAATGA
Protein sequenceShow/hide protein sequence
MYFCGRKGTEQNVATSKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGK
QFYKGTQTFGCKMVSKSVKKIKAFKKGGSPSRDNVYGVRVRGFSFSFSDAFATNSFVNKKRIEPMIHKKTKKERCVVK