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HG10021770 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10021770
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein DOUBLE-STRAND BREAK FORMATION
Genome locationChr05:16400431..16400613
RNA-Seq ExpressionHG10021770
SyntenyHG10021770
Gene Ontology termsGO:0042138 - meiotic DNA double-strand break formation (biological process)
InterPro domainsIPR044969 - Protein DOUBLE-STRAND BREAK FORMATION


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583341.1 Protein DOUBLE-STRAND BREAK FORMATION, partial [Cucurbita argyrosperma subsp. sororia]1.3e-1386.79Show/hide
Query:  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEAS
        MSLMDVKS +KE LR ES SIIRET EKTDDQKLLVIEFLVRAFALVGDIEA+
Subjt:  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEAS

KAG7019109.1 hypothetical protein SDJN02_18067, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-1385.19Show/hide
Query:  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASI
        MSLMDVKS +KE LR ES SIIRET EKTDDQKLLVIEFLVRAFALVGDIEA++
Subjt:  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASI

XP_023520164.1 uncharacterized protein LOC111783465 isoform X1 [Cucurbita pepo subsp. pepo]6.5e-1380.36Show/hide
Query:  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL
        MSLMDVKS +KE LR ES SIIRET +KTDDQKLLVIEFLVRAFALVGDIE+ + L
Subjt:  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL

XP_038895344.1 protein DOUBLE-STRAND BREAK FORMATION isoform X1 [Benincasa hispida]9.0e-1587.5Show/hide
Query:  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL
        MSLMDVKS LKEFLR ES SIIRETAEKTDDQKLLVIEFLVRAFALVGDIE+ + L
Subjt:  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL

XP_038895347.1 protein DOUBLE-STRAND BREAK FORMATION isoform X2 [Benincasa hispida]9.0e-1587.5Show/hide
Query:  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL
        MSLMDVKS LKEFLR ES SIIRETAEKTDDQKLLVIEFLVRAFALVGDIE+ + L
Subjt:  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL

TrEMBL top hitse value%identityAlignment
A0A1S3CL48 uncharacterized protein LOC103502216 isoform X11.2e-1281.82Show/hide
Query:  SLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL
        SL DVKSS  E LR ES SIIRETAEKTDDQKLLVIEFLVRAFALVGDIE+ + L
Subjt:  SLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL

A0A1S3CL50 uncharacterized protein LOC103502216 isoform X29.1e-1388.24Show/hide
Query:  SLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEA
        SL DVKSS  E LR ES SIIRETAEKTDDQKLLVIEFLVRAFALVGDIEA
Subjt:  SLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEA

A0A5A7TKX6 Uncharacterized protein1.2e-1281.82Show/hide
Query:  SLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL
        SL DVKSS  E LR ES SIIRETAEKTDDQKLLVIEFLVRAFALVGDIE+ + L
Subjt:  SLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL

A0A6J1HMC3 uncharacterized protein LOC111464906 isoform X27.0e-1380.36Show/hide
Query:  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL
        MSLMDVKS +KE L  ES SIIRET EKTDDQKLLVIEFLVRAFALVGDIE+ + L
Subjt:  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL

A0A6J1HPP0 uncharacterized protein LOC111464906 isoform X17.0e-1380.36Show/hide
Query:  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL
        MSLMDVKS +KE L  ES SIIRET EKTDDQKLLVIEFLVRAFALVGDIE+ + L
Subjt:  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL

SwissProt top hitse value%identityAlignment
Q8RX33 Protein DOUBLE-STRAND BREAK FORMATION5.7e-0443.4Show/hide
Query:  SLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASI
        S ++V+S L++F+R ES  I  E   ++   KL V+EF  RAFAL+GD+E+ +
Subjt:  SLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASI

Arabidopsis top hitse value%identityAlignment
AT1G07060.1 unknown protein4.1e-0543.4Show/hide
Query:  SLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASI
        S ++V+S L++F+R ES  I  E   ++   KL V+EF  RAFAL+GD+E+ +
Subjt:  SLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTTGATGGATGTCAAATCCAGCTTAAAAGAATTCCTCAGACTTGAATCTCCATCTATCATTCGTGAAACCGCCGAGAAAACTGATGATCAAAAGCTTCTAGTAAT
CGAATTTCTTGTTCGAGCTTTTGCCCTTGTTGGAGACATTGAGGCGAGTATTCATTTGCATAACTCTCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTTGATGGATGTCAAATCCAGCTTAAAAGAATTCCTCAGACTTGAATCTCCATCTATCATTCGTGAAACCGCCGAGAAAACTGATGATCAAAAGCTTCTAGTAAT
CGAATTTCTTGTTCGAGCTTTTGCCCTTGTTGGAGACATTGAGGCGAGTATTCATTTGCATAACTCTCTGTGA
Protein sequenceShow/hide protein sequence
MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHLHNSL