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HG10021780 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10021780
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCT domain-containing protein
Genome locationChr05:16559925..16560943
RNA-Seq ExpressionHG10021780
SyntenyHG10021780
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR010402 - CCT domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN65847.1 hypothetical protein Csa_023240 [Cucumis sativus]1.8e-4670.51Show/hide
Query:  FSWLVKSPKKE--DEQQV---PNSIWDDDFKAFFELTDEENPPPPM-QPDY---RFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSL-SN
        FSWLVKSPKKE   EQQV   P+SIW+DDF+AFF+LT EE PPPP+  PDY   + H + VME+  K ++LNLNLN +EVLEAWS RGSLWAAASS  SN
Subjt:  FSWLVKSPKKE--DEQQV---PNSIWDDDFKAFFELTDEENPPPPM-QPDY---RFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSL-SN

Query:  DPTHDPYMGEVP--RMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK
        D TH PYMGEVP  RMEEER RRV RYKEKR  R+F KKIRYQVRKLNA++RPRIK
Subjt:  DPTHDPYMGEVP--RMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK

XP_023520167.1 zinc finger protein CONSTANS-LIKE 6 [Cucurbita pepo subsp. pepo]4.2e-4054.27Show/hide
Query:  MSFSWLVKSPKK---EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDY--------------------------------------------------
        M +S L+KSPKK   E+EQ+VPNSIW DDFKAFFEL++EE  P   Q ++                                                  
Subjt:  MSFSWLVKSPKK---EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDY--------------------------------------------------

Query:  RFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK
         F   GVMESKKK ASLNLNLN +EV EAWSGRGSLWAA  S  ++PTH+ YMGEVPRMEEERTRRV+RY+EKR TRLFS KIRYQVRKLNA+KRPRIK
Subjt:  RFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK

XP_038893944.1 zinc finger protein CONSTANS-LIKE 16 isoform X1 [Benincasa hispida]2.8e-6084.56Show/hide
Query:  MSFSWLVKSPKKEDEQQVPNSIWDDDFKAFFELTDEENPPPP--MQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLW-AAASSLSNDPTHD
        M FSWLVKSPKKEDEQQVPNSIW+DDFKAFFELTDEENPP P   QPDY FHD   ME+K K  SLNLNLN +EVLEAWS RGSLW AAASSL++D THD
Subjt:  MSFSWLVKSPKKEDEQQVPNSIWDDDFKAFFELTDEENPPPP--MQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLW-AAASSLSNDPTHD

Query:  PYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK
        PYMGEVPRMEEERTRRV+RYKEKR+TRLFSKKIRYQVRKLNAEKRPRIK
Subjt:  PYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK

XP_038893945.1 zinc finger protein CONSTANS-LIKE 7 isoform X2 [Benincasa hispida]2.8e-6084.56Show/hide
Query:  MSFSWLVKSPKKEDEQQVPNSIWDDDFKAFFELTDEENPPPP--MQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLW-AAASSLSNDPTHD
        M FSWLVKSPKKEDEQQVPNSIW+DDFKAFFELTDEENPP P   QPDY FHD   ME+K K  SLNLNLN +EVLEAWS RGSLW AAASSL++D THD
Subjt:  MSFSWLVKSPKKEDEQQVPNSIWDDDFKAFFELTDEENPPPP--MQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLW-AAASSLSNDPTHD

Query:  PYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK
        PYMGEVPRMEEERTRRV+RYKEKR+TRLFSKKIRYQVRKLNAEKRPRIK
Subjt:  PYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK

XP_038893946.1 zinc finger protein CONSTANS-LIKE 7 isoform X3 [Benincasa hispida]2.8e-6084.56Show/hide
Query:  MSFSWLVKSPKKEDEQQVPNSIWDDDFKAFFELTDEENPPPP--MQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLW-AAASSLSNDPTHD
        M FSWLVKSPKKEDEQQVPNSIW+DDFKAFFELTDEENPP P   QPDY FHD   ME+K K  SLNLNLN +EVLEAWS RGSLW AAASSL++D THD
Subjt:  MSFSWLVKSPKKEDEQQVPNSIWDDDFKAFFELTDEENPPPP--MQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLW-AAASSLSNDPTHD

Query:  PYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK
        PYMGEVPRMEEERTRRV+RYKEKR+TRLFSKKIRYQVRKLNAEKRPRIK
Subjt:  PYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK

TrEMBL top hitse value%identityAlignment
A0A0A0LYC0 CCT domain-containing protein8.5e-4770.51Show/hide
Query:  FSWLVKSPKKE--DEQQV---PNSIWDDDFKAFFELTDEENPPPPM-QPDY---RFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSL-SN
        FSWLVKSPKKE   EQQV   P+SIW+DDF+AFF+LT EE PPPP+  PDY   + H + VME+  K ++LNLNLN +EVLEAWS RGSLWAAASS  SN
Subjt:  FSWLVKSPKKE--DEQQV---PNSIWDDDFKAFFELTDEENPPPPM-QPDY---RFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSL-SN

Query:  DPTHDPYMGEVP--RMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK
        D TH PYMGEVP  RMEEER RRV RYKEKR  R+F KKIRYQVRKLNA++RPRIK
Subjt:  DPTHDPYMGEVP--RMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK

A0A2N9FHK6 CCT domain-containing protein1.4e-2555.63Show/hide
Query:  PKK--EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRME
        PK+  EDE +    ++++  + FFE  +EE+       D +  + GV++  +  ASLNLNLN +EVL+AWS RGSLWA  SS S   ++  YMGEVP ME
Subjt:  PKK--EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRME

Query:  EERTRR---VMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK
        EERTRR   V+RYKEKR TRLFSKKIRYQVRKLNA+KRPR+K
Subjt:  EERTRR---VMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK

A0A6J1DMX8 zinc finger protein CONSTANS-LIKE 6 isoform X11.9e-3049.22Show/hide
Query:  MSFSWLVKSPKKEDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDYRFHDHG-----------------------VMESKKKAA---------------
        M +SW +KSP KE+EQ+VPN     DF+AF E   ++ PPPP + +  F  +G                       ++ + ++AA               
Subjt:  MSFSWLVKSPKKEDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDYRFHDHG-----------------------VMESKKKAA---------------

Query:  -------SLNLNLNCDEVLEAWSGRGSLWAAA--SSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK
               SL LNLN +EVLEAWSGRGSLWAAA  SSLSN  T+  YMGEVPR+EEER RRV+RYKEKR+ RLFS KIRYQVRKLNAEKR RIK
Subjt:  -------SLNLNLNCDEVLEAWSGRGSLWAAA--SSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK

A0A6J1HJ00 zinc finger protein CONSTANS-LIKE 62.9e-3952.74Show/hide
Query:  MSFSWLVKSPKK---EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDY--------------------------------------------------
        M +S L+KSPKK   E+EQ+VPNSIW DDFKAFFEL++EE  P   Q ++                                                  
Subjt:  MSFSWLVKSPKK---EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDY--------------------------------------------------

Query:  --RFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRI
           F   GVM+SKKK ASLNLNLN +EV EAWSGRGSLWA   S  ++PTH+ YMGEVPRMEEERTRRV+RY+EKR TRLFS KIRYQVRKLNA+KRPRI
Subjt:  --RFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRI

Query:  K
        K
Subjt:  K

A0A6J1I4F9 zinc finger protein CONSTANS-LIKE 61.4e-3652Show/hide
Query:  MSFSWLVKSPKK--EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDY---------------------------------------------------
        M +S L+K  KK  E+EQ+VPNSI  DDFKAFFEL++EE  P   Q ++                                                   
Subjt:  MSFSWLVKSPKK--EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDY---------------------------------------------------

Query:  -RFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK
          F   GVM+SKKK ASLNLNLN +EV EAWSGRGSLWAA  S  ++PTH+ YMGEVPRMEEERTRRV+RY+EKR TRLFS KIRYQVRKLNA+KRPRIK
Subjt:  -RFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK

SwissProt top hitse value%identityAlignment
Q8LG76 Zinc finger protein CONSTANS-LIKE 63.3e-1142.37Show/hide
Query:  GVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAA--ASSLSND----PTHDPYMGEVPRMEEE------------------RTRRVMRYKEKRNTRLFSK
        G ++ +KK  +L L L+ + V+  W G+G  W A   S +  D    PTH   MGE                         R  RV RY+EKR TRLFSK
Subjt:  GVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAA--ASSLSND----PTHDPYMGEVPRMEEE------------------RTRRVMRYKEKRNTRLFSK

Query:  KIRYQVRKLNAEKRPRIK
        KIRY+VRKLNAEKRPR+K
Subjt:  KIRYQVRKLNAEKRPRIK

Q8RWD0 Zinc finger protein CONSTANS-LIKE 162.8e-1046.67Show/hide
Query:  LNLNLNCDEVLEAWSGRG---------------SLWAAASSLSN--DPTHD-PYMGE-VPRM---EEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEK
        L L LN D V+  W G+G               S W A S + N  + TH   Y+G  +P     +  R  RV RY+EKR TRLFSKKIRY+VRKLNAEK
Subjt:  LNLNLNCDEVLEAWSGRG---------------SLWAAASSLSN--DPTHD-PYMGE-VPRM---EEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEK

Query:  RPRIK
        RPR+K
Subjt:  RPRIK

Q9C9A9 Zinc finger protein CONSTANS-LIKE 75.6e-1135.9Show/hide
Query:  EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAA---SSLSNDPTHDPYM---------
        ++E +V   I   D K   +  +EE          +  D      K +  SL L L+   V+ AW   GS W        +    T  P++         
Subjt:  EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAA---SSLSNDPTHDPYM---------

Query:  --GEVPRM--------EEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK
          G V R         + ER  RV+RYKEKR TRLFSKKIRY+VRKLNAE+RPRIK
Subjt:  --GEVPRM--------EEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK

Q9LU68 Protein CHLOROPLAST IMPORT APPARATUS 21.8e-0945.16Show/hide
Query:  ESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEE--RTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK
        E+  K     L L+ D VLEAWS + S +      S     +  + ++    +   R   V+RYKEKR TRLFSKKIRYQVRKLNA++RPR+K
Subjt:  ESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEE--RTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK

Q9M9B3 Zinc finger protein CONSTANS-LIKE 83.4e-0845.57Show/hide
Query:  LNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK
        LN + V+ AW  + S     ++ S+     P + E  R+  ER  RV RY++KR  RLF KKIRY+VRK+NA+KRPR+K
Subjt:  LNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK

Arabidopsis top hitse value%identityAlignment
AT1G07050.1 CCT motif family protein2.4e-1743.41Show/hide
Query:  WDDDFKAFFELTDEENPPPPMQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSG-RGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRR----VMRY
        W++D        ++ +        + F ++   + + K   L LNLN  EV++AWS  +  LW   S+L N      Y GEVP +EE+R  R    V+RY
Subjt:  WDDDFKAFFELTDEENPPPPMQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSG-RGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRR----VMRY

Query:  KEKRNTRLFSKKIRYQVRKLNAEKRPRIK
        KEKR +RLFSKKIRYQVRKLNA+KRPR K
Subjt:  KEKRNTRLFSKKIRYQVRKLNAEKRPRIK

AT1G68520.1 B-box type zinc finger protein with CCT domain2.3e-1242.37Show/hide
Query:  GVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAA--ASSLSND----PTHDPYMGEVPRMEEE------------------RTRRVMRYKEKRNTRLFSK
        G ++ +KK  +L L L+ + V+  W G+G  W A   S +  D    PTH   MGE                         R  RV RY+EKR TRLFSK
Subjt:  GVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAA--ASSLSND----PTHDPYMGEVPRMEEE------------------RTRRVMRYKEKRNTRLFSK

Query:  KIRYQVRKLNAEKRPRIK
        KIRY+VRKLNAEKRPR+K
Subjt:  KIRYQVRKLNAEKRPRIK

AT1G73870.1 B-box type zinc finger protein with CCT domain3.9e-1235.9Show/hide
Query:  EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAA---SSLSNDPTHDPYM---------
        ++E +V   I   D K   +  +EE          +  D      K +  SL L L+   V+ AW   GS W        +    T  P++         
Subjt:  EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAA---SSLSNDPTHDPYM---------

Query:  --GEVPRM--------EEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK
          G V R         + ER  RV+RYKEKR TRLFSKKIRY+VRKLNAE+RPRIK
Subjt:  --GEVPRM--------EEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK

AT4G25990.2 CCT motif family protein8.8e-1251.16Show/hide
Query:  LNLNCDEVLEAWSGRGSLWA--AASSLSNDPTHDPYMGEVPRMEEE--RTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKV
        L L+ D VLEAWSG+ S ++     S ++       +GE+    E   R   V+RYKEKR  RLFSKKIRYQVRKLNA++RPR+KV
Subjt:  LNLNCDEVLEAWSGRGSLWA--AASSLSNDPTHDPYMGEVPRMEEE--RTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKV

AT5G14370.1 CCT motif family protein1.4e-1243.69Show/hide
Query:  SLNLNLNCDEVLEAWSGRGSLWA------------AASSLSNDPTHDPYMGEVPRMEE-------ERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRP
        SL L L+ ++++EAWS +G+L+             A++   ND      +  VP ME         R   ++RYKEKR  RLFSK+IRYQVRKLNAEKRP
Subjt:  SLNLNLNCDEVLEAWSGRGSLWA------------AASSLSNDPTHDPYMGEVPRMEE-------ERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRP

Query:  RIK
        R+K
Subjt:  RIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTTTAGTTGGTTAGTGAAGAGCCCAAAGAAAGAAGATGAACAACAAGTTCCTAATTCCATTTGGGACGATGACTTTAAAGCTTTTTTTGAGCTCACCGATGAAGA
AAACCCACCGCCGCCGATGCAGCCGGATTATCGTTTCCACGACCACGGCGTTATGGAAAGCAAGAAGAAGGCAGCTTCTTTGAACTTAAATCTCAACTGTGATGAGGTTT
TGGAAGCATGGTCCGGCCGTGGATCTCTTTGGGCCGCCGCGTCTTCTCTTTCCAACGACCCAACTCACGACCCCTATATGGGAGAGGTTCCAAGAATGGAGGAAGAAAGA
ACAAGAAGAGTGATGAGGTACAAGGAAAAGCGTAACACCAGATTATTCTCCAAGAAGATAAGATACCAAGTTCGTAAGCTCAATGCAGAGAAAAGGCCTAGAATAAAGGT
GAATATAATCAACCCCTTTCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTTTAGTTGGTTAGTGAAGAGCCCAAAGAAAGAAGATGAACAACAAGTTCCTAATTCCATTTGGGACGATGACTTTAAAGCTTTTTTTGAGCTCACCGATGAAGA
AAACCCACCGCCGCCGATGCAGCCGGATTATCGTTTCCACGACCACGGCGTTATGGAAAGCAAGAAGAAGGCAGCTTCTTTGAACTTAAATCTCAACTGTGATGAGGTTT
TGGAAGCATGGTCCGGCCGTGGATCTCTTTGGGCCGCCGCGTCTTCTCTTTCCAACGACCCAACTCACGACCCCTATATGGGAGAGGTTCCAAGAATGGAGGAAGAAAGA
ACAAGAAGAGTGATGAGGTACAAGGAAAAGCGTAACACCAGATTATTCTCCAAGAAGATAAGATACCAAGTTCGTAAGCTCAATGCAGAGAAAAGGCCTAGAATAAAGGT
GAATATAATCAACCCCTTTCCTTAA
Protein sequenceShow/hide protein sequence
MSFSWLVKSPKKEDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEER
TRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKVNIINPFP