CuGenDBv2

Gene ID	HG10021813
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ran-binding protein 1 homolog a
Genome location	Chr05:17080180..17083005
RNA-Seq Expression	HG10021813
Synteny	HG10021813
Gene Ontology terms	GO:0046907 - intracellular transport (biological process) GO:0005643 - nuclear pore (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0005096 - GTPase activator activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583353.1 Ran-binding protein 1-like c, partial [Cucurbita argyrosperma subsp. sororia]

5.3e-13

37.98

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Query:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDL--------------------------------------------------
        MAS DTERREEEEAPA EDEDTGAQVAPIVKLEEV VTTGEENEDAILDL                                                  
Subjt:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDL--------------------------------------------------

Query:  ----------------------------------------------------------------------SRLLEKLSVEDEKKAEDKAEDKAEDTPVKS
                                                                              + LLEKLSVEDEKKAE KAEDKAED PVKS
Subjt:  ----------------------------------------------------------------------SRLLEKLSVEDEKKAEDKAEDKAEDTPVKS

Query:  KEEDKPEG
        +E+DKPEG
Subjt:  KEEDKPEG

XP_008457357.1 PREDICTED: ran-binding protein 1 homolog a [Cucumis melo]

2.5e-15

38.39

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Query:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDL--------------------------------------------------
        MAS+DTERREEEEAPA EDEDTGAQVAPIVKLE V VTTGEE+EDAILDL                                                  
Subjt:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDL--------------------------------------------------

Query:  ----------------------------------------------------------------------SRLLEKLSVEDEKKAEDKAEDKAEDTPVKS
                                                                              + LLEKLSVEDEKKAEDK+EDKAEDTPVKS
Subjt:  ----------------------------------------------------------------------SRLLEKLSVEDEKKAEDKAEDKAEDTPVKS

Query:  KEEDKPEGGKG
        KEEDKPEG  G
Subjt:  KEEDKPEGGKG

XP_022150930.1 ran-binding protein 1 homolog b-like [Momordica charantia]

4.8e-14

36.07

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Query:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDL--------------------------------------------------
        MASTDTERREEEEAP GEDEDTGAQVAPIVKLE V VTTGEE+EDAILDL                                                  
Subjt:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDL--------------------------------------------------

Query:  ----------------------------------------------------------------------SRLLEKLSVEDEKKAEDKAEDKAEDTPVKS
                                                                              + LLEKLSVE+EKKAEDK+EDK+EDTP KS
Subjt:  ----------------------------------------------------------------------SRLLEKLSVEDEKKAEDKAEDKAEDTPVKS

Query:  KEEDKPEGGKGNRMQRKTR
        KEED PEG  G     K++
Subjt:  KEEDKPEGGKGNRMQRKTR

XP_023519267.1 ran-binding protein 1 homolog a-like [Cucurbita pepo subsp. pepo]

1.8e-13

37.98

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Query:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDL--------------------------------------------------
        MAS DTERREEEEAPA EDEDTGAQVAPIVKLEEV VTTGEENEDAILDL                                                  
Subjt:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDL--------------------------------------------------

Query:  ----------------------------------------------------------------------SRLLEKLSVEDEKKAEDKAEDKAEDTPVKS
                                                                              + LLEKLSVEDE KAEDK+EDKAEDTPVKS
Subjt:  ----------------------------------------------------------------------SRLLEKLSVEDEKKAEDKAEDKAEDTPVKS

Query:  KEEDKPEG
        +E+DKPEG
Subjt:  KEEDKPEG

XP_038894876.1 ran-binding protein 1 homolog a [Benincasa hispida]

4.3e-15

78.79

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Query:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLSRLLEKLSVEDEKKAE
        MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDL   L +   +  +  E
Subjt:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLSRLLEKLSVEDEKKAE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LXN6 RanBD1 domain-containing protein

1.2e-15

38.39

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Query:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDL--------------------------------------------------
        MAS+DTERREEEEAPA EDEDTGAQVAPIVKLE V VTTGEE+EDAILDL                                                  
Subjt:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDL--------------------------------------------------

Query:  ----------------------------------------------------------------------SRLLEKLSVEDEKKAEDKAEDKAEDTPVKS
                                                                              + LLEKLSVEDEKKAEDK+EDKAEDTPVKS
Subjt:  ----------------------------------------------------------------------SRLLEKLSVEDEKKAEDKAEDKAEDTPVKS

Query:  KEEDKPEGGKG
        KEEDKPEG  G
Subjt:  KEEDKPEGGKG

A0A1S3C5A9 ran-binding protein 1 homolog a

1.2e-15

38.39

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Query:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDL--------------------------------------------------
        MAS+DTERREEEEAPA EDEDTGAQVAPIVKLE V VTTGEE+EDAILDL                                                  
Subjt:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDL--------------------------------------------------

Query:  ----------------------------------------------------------------------SRLLEKLSVEDEKKAEDKAEDKAEDTPVKS
                                                                              + LLEKLSVEDEKKAEDK+EDKAEDTPVKS
Subjt:  ----------------------------------------------------------------------SRLLEKLSVEDEKKAEDKAEDKAEDTPVKS

Query:  KEEDKPEGGKG
        KEEDKPEG  G
Subjt:  KEEDKPEGGKG

A0A5A7UVN5 Ran-binding protein 1-like protein a-like

1.2e-15

38.39

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Query:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDL--------------------------------------------------
        MAS+DTERREEEEAPA EDEDTGAQVAPIVKLE V VTTGEE+EDAILDL                                                  
Subjt:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDL--------------------------------------------------

Query:  ----------------------------------------------------------------------SRLLEKLSVEDEKKAEDKAEDKAEDTPVKS
                                                                              + LLEKLSVEDEKKAEDK+EDKAEDTPVKS
Subjt:  ----------------------------------------------------------------------SRLLEKLSVEDEKKAEDKAEDKAEDTPVKS

Query:  KEEDKPEGGKG
        KEEDKPEG  G
Subjt:  KEEDKPEGGKG

A0A6J1D9U4 ran-binding protein 1 homolog b-like

2.3e-14

36.07

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Query:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDL--------------------------------------------------
        MASTDTERREEEEAP GEDEDTGAQVAPIVKLE V VTTGEE+EDAILDL                                                  
Subjt:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDL--------------------------------------------------

Query:  ----------------------------------------------------------------------SRLLEKLSVEDEKKAEDKAEDKAEDTPVKS
                                                                              + LLEKLSVE+EKKAEDK+EDK+EDTP KS
Subjt:  ----------------------------------------------------------------------SRLLEKLSVEDEKKAEDKAEDKAEDTPVKS

Query:  KEEDKPEGGKGNRMQRKTR
        KEED PEG  G     K++
Subjt:  KEEDKPEGGKGNRMQRKTR

A0A6J1HKC3 ran-binding protein 1 homolog a-like

3.3e-13

37.44

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Query:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDL--------------------------------------------------
        MAS DTERREEEEAPA EDEDTGAQVAPIVKLEEV VTTGEENEDAILDL                                                  
Subjt:  MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDL--------------------------------------------------

Query:  ----------------------------------------------------------------------SRLLEKLSVEDEK---KAEDKAEDKAEDTP
                                                                              + LLEKLSVEDEK   KAEDK+EDKAEDTP
Subjt:  ----------------------------------------------------------------------SRLLEKLSVEDEK---KAEDKAEDKAEDTP

Query:  VKSKEEDKPEG
        VKS+E+ KPEG
Subjt:  VKSKEEDKPEG

SwissProt top hits

e value

%identity

Alignment

P92985 Ran-binding protein 1 homolog c

7.4e-10

58.21

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Query:  MASTDTER-REEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLSRLLEKLSVEDEKKAE
        MAST+ ER   E+E    EDEDTGAQVAPIV+LEEV VTTGEE+EDA+LDL   + +   E  +  E
Subjt:  MASTDTER-REEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLSRLLEKLSVEDEKKAE

Q8RWG8 Ran-binding protein 1 homolog b

1.3e-09

59.68

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Query:  DTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLSRLLEKLSVEDEKKAE
        + E R+EEE  A EDEDTGAQVAPIV+LEEV VTTGEE+ED ILDL   L +   +  +  E
Subjt:  DTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLSRLLEKLSVEDEKKAE

Q9LMK7 Ran-binding protein 1 homolog a

3.0e-11

77.08

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Query:  ERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLSRLL
        E R+EEEA A EDEDTGAQVAPIV+LEEV VTTGEE+EDA+LDL   L
Subjt:  ERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLSRLL

Arabidopsis top hits

e value

%identity

Alignment

AT1G07140.1 Pleckstrin homology (PH) domain superfamily protein

2.1e-12

77.08

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Query:  ERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLSRLL
        E R+EEEA A EDEDTGAQVAPIV+LEEV VTTGEE+EDA+LDL   L
Subjt:  ERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLSRLL

AT2G30060.1 Pleckstrin homology (PH) domain superfamily protein

9.0e-11

59.68

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Query:  DTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLSRLLEKLSVEDEKKAE
        + E R+EEE  A EDEDTGAQVAPIV+LEEV VTTGEE+ED ILDL   L +   +  +  E
Subjt:  DTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLSRLLEKLSVEDEKKAE

AT5G58590.1 RAN binding protein 1

5.3e-11

58.21

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Query:  MASTDTER-REEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLSRLLEKLSVEDEKKAE
        MAST+ ER   E+E    EDEDTGAQVAPIV+LEEV VTTGEE+EDA+LDL   + +   E  +  E
Subjt:  MASTDTER-REEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLSRLLEKLSVEDEKKAE

Sequences

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CDS sequence

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ATGGCGAGCACCGATACCGAACGCAGAGAAGAGGAGGAGGCTCCGGCCGGAGAGGATGAAGACACTGGAGCTCAAGTTGCCCCAATCGTCAAGTTGGAGGAGGTCACCGT
CACCACCGGTGAAGAAAATGAAGACGCTATTCTCGATCTCAGCCGTCTACTTGAAAAATTGAGTGTTGAAGACGAAAAGAAAGCCGAAGATAAAGCTGAAGATAAAGCTG
AGGACACACCTGTAAAATCTAAGGAAGAGGATAAACCTGAGGGCGGGAAGGGAAATCGGATGCAGAGAAAGACTAGGAGCCTGTTTCCTCTGCCAGATAATATACGGTAG

mRNA sequence

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Protein sequence

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MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLSRLLEKLSVEDEKKAEDKAEDKAEDTPVKSKEEDKPEGGKGNRMQRKTRSLFPLPDNIR

HG10021813 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome