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HG10021853 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10021853
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
Genome locationChr05:17573806..17573994
RNA-Seq ExpressionHG10021853
SyntenyHG10021853
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]1.0e-0546.55Show/hide
Query:  WKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSG-CKFTRGRRINLSEAEAIVEGLKAI
        WKLN DA WS +   GG GWI+CD  G  +L+G CK    + IN  E   I+ GL+ I
Subjt:  WKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSG-CKFTRGRRINLSEAEAIVEGLKAI
XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]2.0e-0444.07Show/hide
Query:  WKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSGCKFTRG-RRINLSEAEAIVEGLKAIK
        WKLN DA W       G GWI+ D +G  + +GC+  R  R I   E  AI EGL+AI+
Subjt:  WKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSGCKFTRG-RRINLSEAEAIVEGLKAIK
XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]2.0e-0444.07Show/hide
Query:  WKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSGCKFTRG-RRINLSEAEAIVEGLKAIK
        WKLN DA W       G GWI+ D +G  + +GC+  R  R I   E  AI EGL+AI+
Subjt:  WKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSGCKFTRG-RRINLSEAEAIVEGLKAIK
TrEMBL top hitse value%identityAlignment
A0A6J1CQG0 uncharacterized protein LOC1110132165.0e-0646.55Show/hide
Query:  WKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSG-CKFTRGRRINLSEAEAIVEGLKAI
        WKLN DA WS +   GG GWI+CD  G  +L+G CK    + IN  E   I+ GL+ I
Subjt:  WKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSG-CKFTRGRRINLSEAEAIVEGLKAI
A0A6J1DL64 uncharacterized protein LOC111022134 isoform X19.5e-0544.07Show/hide
Query:  WKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSGCKFTRG-RRINLSEAEAIVEGLKAIK
        WKLN DA W       G GWI+ D +G  + +GC+  R  R I   E  AI EGL+AI+
Subjt:  WKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSGCKFTRG-RRINLSEAEAIVEGLKAIK
A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X29.5e-0544.07Show/hide
Query:  WKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSGCKFTRG-RRINLSEAEAIVEGLKAIK
        WKLN DA W       G GWI+ D +G  + +GC+  R  R I   E  AI EGL+AI+
Subjt:  WKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSGCKFTRG-RRINLSEAEAIVEGLKAIK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGACCATTGGAAACTCAATGTTGATGCGATGTGGTCATATAAGGAGGTCAGAGGAGGGTTTGGTTGGATTGTTTGTGATCATGAAGGTCATGCGCTTTTGAGTGG
CTGCAAATTCACTAGAGGAAGGAGAATTAATCTGTCGGAAGCTGAGGCCATCGTAGAGGGTCTGAAGGCAATCAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTGACCATTGGAAACTCAATGTTGATGCGATGTGGTCATATAAGGAGGTCAGAGGAGGGTTTGGTTGGATTGTTTGTGATCATGAAGGTCATGCGCTTTTGAGTGG
CTGCAAATTCACTAGAGGAAGGAGAATTAATCTGTCGGAAGCTGAGGCCATCGTAGAGGGTCTGAAGGCAATCAAGTAG
Protein sequenceShow/hide protein sequence
MIDHWKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSGCKFTRGRRINLSEAEAIVEGLKAIK