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HG10021887 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10021887
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionElongin-C
Genome locationChr05:17949897..17951715
RNA-Seq ExpressionHG10021887
SyntenyHG10021887
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0070449 - elongin complex (cellular component)
GO:0003746 - translation elongation factor activity (molecular function)
InterPro domainsIPR001232 - S-phase kinase-associated protein 1-like
IPR011333 - SKP1/BTB/POZ domain superfamily
IPR016073 - SKP1 component, POZ domain
IPR039948 - Elongin-C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008457436.1 PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo]1.5e-4696.94Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREV+FPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022158132.1 elongin-C [Momordica charantia]6.6e-4797.96Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREV+FPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022948640.1 elongin-C-like [Cucurbita moschata]7.3e-4695.92Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREV+FPEIST ILEKICQYFYW+LQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022964706.1 elongin-C-like [Cucurbita moschata]3.8e-4797.96Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREV+FPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_038895699.1 elongin-C [Benincasa hispida]1.7e-4798.98Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREV+FPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

TrEMBL top hitse value%identityAlignment
A0A0A0LY44 Elongin-C7.1e-4796.94Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREV+FPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A1S3C6T3 Elongin-C7.1e-4796.94Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREV+FPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1DWE1 Elongin-C3.2e-4797.96Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREV+FPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1HJP6 Elongin-C1.9e-4797.96Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREV+FPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1KFM7 Elongin-C3.5e-4695.92Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREV+FPEIST ILEKICQYFYW+LQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

SwissProt top hitse value%identityAlignment
P83940 Elongin-C7.9e-1947.83Show/hide
Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV+F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL

P83941 Elongin-C7.9e-1947.83Show/hide
Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV+F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q15369 Elongin-C7.9e-1947.83Show/hide
Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV+F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q2KII4 Elongin-C7.9e-1947.83Show/hide
Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV+F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q9USX9 Elongin-C2.4e-1542.11Show/hide
Query:  KEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKE-TEFPIEPELTLELMMAANYL
        ++E V+LIS +GF F++ K+ A +S TIR +L + G F+E+Q  E +FP+I  T+LEK+C+Y ++N ++ +  +  +F I PE+ LEL++ A YL
Subjt:  KEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKE-TEFPIEPELTLELMMAANYL

Arabidopsis top hitse value%identityAlignment
AT5G59140.1 BTB/POZ domain-containing protein7.0e-3980.85Show/hide
Query:  ETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        ETVKLIS EGFEFVI ++AAMVSQTIR+MLTSPG F+ES+   V+FP+ISTTILEKICQYFYW+LQ++ GKETEF IEPELTLELMMAANYLHT
Subjt:  ETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGGAAGAGACTGTAAAATTGATCAGCGCTGAGGGTTTTGAGTTCGTGATCCACAAAGATGCTGCCATGGTTTCTCAGACGATTCGAAATATGCTTACTTCCCC
AGGAAATTTTGCTGAATCGCAGCACAGAGAAGTGTCTTTTCCTGAGATTAGCACCACCATTCTCGAGAAGATTTGCCAATATTTTTACTGGAATCTTCAATTCGCCAGCG
GGAAAGAGACCGAGTTCCCTATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGGAAGAGACTGTAAAATTGATCAGCGCTGAGGGTTTTGAGTTCGTGATCCACAAAGATGCTGCCATGGTTTCTCAGACGATTCGAAATATGCTTACTTCCCC
AGGAAATTTTGCTGAATCGCAGCACAGAGAAGTGTCTTTTCCTGAGATTAGCACCACCATTCTCGAGAAGATTTGCCAATATTTTTACTGGAATCTTCAATTCGCCAGCG
GGAAAGAGACCGAGTTCCCTATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA
Protein sequenceShow/hide protein sequence
MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVSFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT