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HG10021923 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10021923
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationChr05:18377351..18377695
RNA-Seq ExpressionHG10021923
SyntenyHG10021923
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044675 - E3 ubiquitin-protein ligase RING1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067736.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]1.5e-2665.38Show/hide
Query:  MRIYAQLQGEIIRQPWAAAATQPN-AAEHEETSSAAAMVAYKDVIKTTSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV
        M++ AQ Q EIIRQ      TQ N   E EETSSA   VAYK           CCAICIE FE+EEICGVVESCGH FH+DCMDQWLRIE+RCPLCRCLV
Subjt:  MRIYAQLQGEIIRQPWAAAATQPN-AAEHEETSSAAAMVAYKDVIKTTSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV

Query:  HIVS
        H VS
Subjt:  HIVS

KAG6583431.1 RING-H2 finger protein ATL5, partial [Cucurbita argyrosperma subsp. sororia]6.7e-2760.36Show/hide
Query:  RIYAQLQGEIIRQPWAAAATQP--NAAEHEETSSAAAMVAYKDVIKTT--SDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRC
        R++A+ + E +RQ  +  A  P  N AE EE +S    VAYKD IKTT  +D  DCCAICIEGF+EEEICGV++ CGH FHK C+DQWL IE+RCPLCRC
Subjt:  RIYAQLQGEIIRQPWAAAATQP--NAAEHEETSSAAAMVAYKDVIKTT--SDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRC

Query:  LVHIVSHNNNN
        LV +VS NNN+
Subjt:  LVHIVSHNNNN

KAG7019192.1 E3 ubiquitin-protein ligase ATL42, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-2659.46Show/hide
Query:  RIYAQLQGEIIRQPWAAAATQP--NAAEHEETSSAAAMVAYKDVIKTT--SDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRC
        R++A+ + E +RQ  +  A  P  N AE EE +S    VAYKD IKTT  +D  DCCAICIEGF+EEE+CGV++ CGH FHK C+DQWL IE+RCPLCRC
Subjt:  RIYAQLQGEIIRQPWAAAATQP--NAAEHEETSSAAAMVAYKDVIKTT--SDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRC

Query:  LVHIVSHNNNN
        LV +VS NNN+
Subjt:  LVHIVSHNNNN

TYJ97407.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]1.5e-2665.38Show/hide
Query:  MRIYAQLQGEIIRQPWAAAATQPN-AAEHEETSSAAAMVAYKDVIKTTSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV
        M++ AQ Q EIIRQ      TQ N   E EETSSA   VAYK           CCAICIE FE+EEICGVVESCGH FH+DCMDQWLRIE+RCPLCRCLV
Subjt:  MRIYAQLQGEIIRQPWAAAATQPN-AAEHEETSSAAAMVAYKDVIKTTSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV

Query:  HIVS
        H VS
Subjt:  HIVS

XP_023520574.1 RING-H2 finger protein ATL64-like [Cucurbita pepo subsp. pepo]3.9e-2759.46Show/hide
Query:  RIYAQLQGEIIRQPWAAAAT--QPNAAEHEETSSAAAMVAYKDVIKTT--SDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRC
        R++A+ + E++R+  + A T  +PN AE EE +S    VAYKD IKTT  +D  DCCAICIEGFEE+EICGV++ CGH FHK C+DQWL I++RCPLCRC
Subjt:  RIYAQLQGEIIRQPWAAAAT--QPNAAEHEETSSAAAMVAYKDVIKTT--SDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRC

Query:  LVHIVSHNNNN
        LV +VS NNN+
Subjt:  LVHIVSHNNNN

TrEMBL top hitse value%identityAlignment
A0A1S4E1K2 RING-type E3 ubiquitin transferase7.3e-2765.38Show/hide
Query:  MRIYAQLQGEIIRQPWAAAATQPN-AAEHEETSSAAAMVAYKDVIKTTSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV
        M++ AQ Q EIIRQ      TQ N   E EETSSA   VAYK           CCAICIE FE+EEICGVVESCGH FH+DCMDQWLRIE+RCPLCRCLV
Subjt:  MRIYAQLQGEIIRQPWAAAATQPN-AAEHEETSSAAAMVAYKDVIKTTSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV

Query:  HIVS
        H VS
Subjt:  HIVS

A0A5A7VMH1 RING-H2 finger protein ATL52-like7.3e-2765.38Show/hide
Query:  MRIYAQLQGEIIRQPWAAAATQPN-AAEHEETSSAAAMVAYKDVIKTTSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV
        M++ AQ Q EIIRQ      TQ N   E EETSSA   VAYK           CCAICIE FE+EEICGVVESCGH FH+DCMDQWLRIE+RCPLCRCLV
Subjt:  MRIYAQLQGEIIRQPWAAAATQPN-AAEHEETSSAAAMVAYKDVIKTTSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV

Query:  HIVS
        H VS
Subjt:  HIVS

A0A5D3BE50 RING-type E3 ubiquitin transferase7.3e-2765.38Show/hide
Query:  MRIYAQLQGEIIRQPWAAAATQPN-AAEHEETSSAAAMVAYKDVIKTTSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV
        M++ AQ Q EIIRQ      TQ N   E EETSSA   VAYK           CCAICIE FE+EEICGVVESCGH FH+DCMDQWLRIE+RCPLCRCLV
Subjt:  MRIYAQLQGEIIRQPWAAAATQPN-AAEHEETSSAAAMVAYKDVIKTTSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV

Query:  HIVS
        H VS
Subjt:  HIVS

A0A6J1HJU0 RING-type E3 ubiquitin transferase1.4e-2558.56Show/hide
Query:  RIYAQLQGEIIRQPWAAAATQP--NAAEHEETSSAAAMVAYKDVIKTT--SDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRC
        R++A+ + E ++Q  + AA  P  N AE EE +S    VAY+D IKTT  +D  D CAICIEGFEEEEICGV++ CGH FHK C+DQWLRI +RCPLCRC
Subjt:  RIYAQLQGEIIRQPWAAAATQP--NAAEHEETSSAAAMVAYKDVIKTT--SDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRC

Query:  LVHIVSHNNNN
        L+ +VS NNN+
Subjt:  LVHIVSHNNNN

A0A6J1I5C3 RING-type E3 ubiquitin transferase8.0e-2656.36Show/hide
Query:  RIYAQLQGEIIRQPWAAAA--TQPNAAEHEETSSAAAMVAYKDVIKT-TSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCL
        R++A+ + E++RQ  + A    +PN AE EE +S    VAY+D+  T  +D  DCCAICIEGFEEEEICGVV+ C H FHK C+D+WL I +RCPLCRCL
Subjt:  RIYAQLQGEIIRQPWAAAA--TQPNAAEHEETSSAAAMVAYKDVIKT-TSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCL

Query:  VHIVSHNNNN
        V +VS NNN+
Subjt:  VHIVSHNNNN

SwissProt top hitse value%identityAlignment
O22255 RING-H2 finger protein ATL646.6e-0950Show/hide
Query:  CAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV
        C++C+  FEEE+   ++  CGHSFH DC+D W R  + CPLCR  V
Subjt:  CAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV

P87237 Uncharacterized RING finger protein C4G3.12c5.0e-0940.28Show/hide
Query:  AEHEETSSAAAMVAYKDVIKTTSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRI-ENRCPLCR
        A HE+   +  + AY D    +S   D C IC+E +   +IC  +++C H FH+ C+DQWL    N CPLCR
Subjt:  AEHEETSSAAAMVAYKDVIKTTSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRI-ENRCPLCR

Q8L9T5 RING-H2 finger protein ATL21.1e-0850Show/hide
Query:  CAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV
        CA+C+  FEE E   V+ +C H+FH DC+D W    + CPLCR LV
Subjt:  CAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV

Q9LZJ6 RING-H2 finger protein ATL51.5e-0842.86Show/hide
Query:  IKTTSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV
        +KT     + C++C+  FEE++   V+  CGH FH DC+D W R  + CPLCR  V
Subjt:  IKTTSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV

Q9SRM0 RING-H2 finger protein ATL666.6e-0946Show/hide
Query:  CAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLVHIVS
        C IC+ GFEE E   V+  C H +H +C+D+WL+ E+ CPLCR  + + S
Subjt:  CAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLVHIVS

Arabidopsis top hitse value%identityAlignment
AT2G27940.1 RING/U-box superfamily protein1.8e-0946.15Show/hide
Query:  KTTSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCR
        K    + + C IC+  FEE E   V+  CGH FH DC+D WL     CPLCR
Subjt:  KTTSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCR

AT2G47560.1 RING/U-box superfamily protein4.7e-1050Show/hide
Query:  CAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV
        C++C+  FEEE+   ++  CGHSFH DC+D W R  + CPLCR  V
Subjt:  CAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV

AT3G11110.1 RING/U-box superfamily protein4.7e-1046Show/hide
Query:  CAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLVHIVS
        C IC+ GFEE E   V+  C H +H +C+D+WL+ E+ CPLCR  + + S
Subjt:  CAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLVHIVS

AT3G16720.1 TOXICOS EN LEVADURA 28.0e-1050Show/hide
Query:  CAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV
        CA+C+  FEE E   V+ +C H+FH DC+D W    + CPLCR LV
Subjt:  CAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV

AT3G62690.1 AtL51.0e-0942.86Show/hide
Query:  IKTTSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV
        +KT     + C++C+  FEE++   V+  CGH FH DC+D W R  + CPLCR  V
Subjt:  IKTTSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAATCTATGCTCAGCTTCAAGGCGAAATTATAAGGCAGCCGTGGGCAGCAGCGGCTACGCAACCGAATGCGGCAGAGCACGAAGAAACCTCGTCCGCTGCCGCAAT
GGTCGCTTACAAAGACGTGATTAAGACGACGTCGGACAAAGGCGATTGCTGTGCCATTTGCATTGAAGGGTTTGAGGAGGAAGAGATTTGTGGAGTTGTTGAGAGTTGTG
GCCATTCTTTTCATAAAGATTGTATGGATCAATGGCTGAGGATTGAGAACCGTTGCCCATTGTGTCGATGTTTGGTTCATATTGTATCTCATAATAATAATAATTCCCAA
GAAAATCAAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGAATCTATGCTCAGCTTCAAGGCGAAATTATAAGGCAGCCGTGGGCAGCAGCGGCTACGCAACCGAATGCGGCAGAGCACGAAGAAACCTCGTCCGCTGCCGCAAT
GGTCGCTTACAAAGACGTGATTAAGACGACGTCGGACAAAGGCGATTGCTGTGCCATTTGCATTGAAGGGTTTGAGGAGGAAGAGATTTGTGGAGTTGTTGAGAGTTGTG
GCCATTCTTTTCATAAAGATTGTATGGATCAATGGCTGAGGATTGAGAACCGTTGCCCATTGTGTCGATGTTTGGTTCATATTGTATCTCATAATAATAATAATTCCCAA
GAAAATCAAGCTTAG
Protein sequenceShow/hide protein sequence
MRIYAQLQGEIIRQPWAAAATQPNAAEHEETSSAAAMVAYKDVIKTTSDKGDCCAICIEGFEEEEICGVVESCGHSFHKDCMDQWLRIENRCPLCRCLVHIVSHNNNNSQ
ENQA