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HG10021925 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10021925
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRING-type domain-containing protein
Genome locationChr05:18402002..18402437
RNA-Seq ExpressionHG10021925
SyntenyHG10021925
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067735.1 RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa]5.3e-3062.28Show/hide
Query:  KKRNNDSESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN------DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQ
        K  NND +S  +  G    +PA +E       EIVQIEAM FSY+EAK SEN      DDYECVICLN+F+  +KCR MKKCGHIFHRSCIDRWL  ER+
Subjt:  KKRNNDSESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN------DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQ

Query:  CPLCRSCVCIVVKP
        CPLCR+CVC+VVKP
Subjt:  CPLCRSCVCIVVKP

KAE8653246.1 hypothetical protein Csa_019623 [Cucumis sativus]3.7e-3166.36Show/hide
Query:  FELTSTDKKR-NNDSE-STSAVAGPMPALQEPEIVQIEAMAFS-YKEAKGSEN-DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLC
        F   S D+K  NN+SE  T  V   +P  +E EIVQIE M FS Y+EAKGSEN DDYECVICLN+F+ G+KC+ MKKCGHIFH SCIDRWL  ER+CPLC
Subjt:  FELTSTDKKR-NNDSE-STSAVAGPMPALQEPEIVQIEAMAFS-YKEAKGSEN-DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLC

Query:  RSCVCIVVKP
        RSCVC+VV P
Subjt:  RSCVCIVVKP

XP_004151032.1 RING-H2 finger protein ATL66 [Cucumis sativus]2.4e-3053.06Show/hide
Query:  MSSLPFVATPPATPPNFELTSTD----------------------KKRNNDSE-STSAVAGPMPALQEPEIVQIEAMAFS-YKEAKGSEN-DDYECVICL
        MS  P++A  P     FE    D                      K  NN+SE  T  V   +P  +E EIVQIE M FS Y+EAKGSEN DDYECVICL
Subjt:  MSSLPFVATPPATPPNFELTSTD----------------------KKRNNDSE-STSAVAGPMPALQEPEIVQIEAMAFS-YKEAKGSEN-DDYECVICL

Query:  NQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP
        N+F+ G+KC+ MKKCGHIFH SCIDRWL  ER+CPLCRSCVC+VV P
Subjt:  NQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP

XP_008457571.1 PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo]4.1e-3062.83Show/hide
Query:  KKRNNDSESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN-----DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQC
        K  NND +S  +  G    +PA +E       EIVQIEAM FSY+EAK SEN     DDYECVICLN+F+  +KCR MKKCGHIFHRSCIDRWL  ER+C
Subjt:  KKRNNDSESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN-----DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQC

Query:  PLCRSCVCIVVKP
        PLCR+CVC+VVKP
Subjt:  PLCRSCVCIVVKP

XP_022998666.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]2.5e-2762.11Show/hide
Query:  NDSESTSAVAGPMPALQEPEIVQIEAMAFSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP
        ++ ES S  AG +P ++EPEIV+IEA  FSY+EA G  +D  EC ICL++F+ G+KCR M KCGHIFHR CIDRWL  +R CPLCRSCVC+VV P
Subjt:  NDSESTSAVAGPMPALQEPEIVQIEAMAFSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP

TrEMBL top hitse value%identityAlignment
A0A0A0LXE1 RING-type domain-containing protein1.2e-3053.06Show/hide
Query:  MSSLPFVATPPATPPNFELTSTD----------------------KKRNNDSE-STSAVAGPMPALQEPEIVQIEAMAFS-YKEAKGSEN-DDYECVICL
        MS  P++A  P     FE    D                      K  NN+SE  T  V   +P  +E EIVQIE M FS Y+EAKGSEN DDYECVICL
Subjt:  MSSLPFVATPPATPPNFELTSTD----------------------KKRNNDSE-STSAVAGPMPALQEPEIVQIEAMAFS-YKEAKGSEN-DDYECVICL

Query:  NQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP
        N+F+ G+KC+ MKKCGHIFH SCIDRWL  ER+CPLCRSCVC+VV P
Subjt:  NQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP

A0A1S3C6H7 RING-H2 finger protein ATL66-like2.0e-3062.83Show/hide
Query:  KKRNNDSESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN-----DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQC
        K  NND +S  +  G    +PA +E       EIVQIEAM FSY+EAK SEN     DDYECVICLN+F+  +KCR MKKCGHIFHRSCIDRWL  ER+C
Subjt:  KKRNNDSESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN-----DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQC

Query:  PLCRSCVCIVVKP
        PLCR+CVC+VVKP
Subjt:  PLCRSCVCIVVKP

A0A5A7VPW6 RING-H2 finger protein ATL66-like2.6e-3062.28Show/hide
Query:  KKRNNDSESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN------DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQ
        K  NND +S  +  G    +PA +E       EIVQIEAM FSY+EAK SEN      DDYECVICLN+F+  +KCR MKKCGHIFHRSCIDRWL  ER+
Subjt:  KKRNNDSESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN------DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQ

Query:  CPLCRSCVCIVVKP
        CPLCR+CVC+VVKP
Subjt:  CPLCRSCVCIVVKP

A0A5D3BGV5 RING-H2 finger protein ATL66-like2.0e-3062.83Show/hide
Query:  KKRNNDSESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN-----DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQC
        K  NND +S  +  G    +PA +E       EIVQIEAM FSY+EAK SEN     DDYECVICLN+F+  +KCR MKKCGHIFHRSCIDRWL  ER+C
Subjt:  KKRNNDSESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN-----DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQC

Query:  PLCRSCVCIVVKP
        PLCR+CVC+VVKP
Subjt:  PLCRSCVCIVVKP

A0A6J1KAT3 RING-type E3 ubiquitin transferase1.2e-2762.11Show/hide
Query:  NDSESTSAVAGPMPALQEPEIVQIEAMAFSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP
        ++ ES S  AG +P ++EPEIV+IEA  FSY+EA G  +D  EC ICL++F+ G+KCR M KCGHIFHR CIDRWL  +R CPLCRSCVC+VV P
Subjt:  NDSESTSAVAGPMPALQEPEIVQIEAMAFSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP

SwissProt top hitse value%identityAlignment
P0C034 RING-H2 finger protein ATL107.5e-1148.33Show/hide
Query:  SYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCV
        SY         D ECVICL+ F  GE+ RL+ KC H FH  CID+WL     CP CR+C+
Subjt:  SYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCV

Q8GW38 RING-H2 finger protein ATL475.7e-1146.55Show/hide
Query:  FSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCR
        F YKE KG++ + ++C +CL +F   +K RL+  C H FH  CID WL++   CPLCR
Subjt:  FSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCR

Q940Q4 RING-H2 finger protein ATL134.0e-1235.58Show/hide
Query:  FELTSTDKKRNNDSESTSAVAGPMPA---LQEPEIVQ--IEAM-AFSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCP
        F LT + + R +  ++ +A+ G +     L +  + Q  I+ +  F YK   G +N  ++C +CL +F+  +K RL+ KC H FH  CID WL++   CP
Subjt:  FELTSTDKKRNNDSESTSAVAGPMPA---LQEPEIVQ--IEAM-AFSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCP

Query:  LCRS
        LCRS
Subjt:  LCRS

Q9LUZ9 RING-H2 finger protein ATL634.4e-1146.15Show/hide
Query:  FSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVV
        F Y+E +  E+++ ECVICL  ++ G+  R ++ CGH FH  CID WL +   CPLCRS V   V
Subjt:  FSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVV

Q9LX93 E3 ubiquitin-protein ligase RING13.0e-1248.21Show/hide
Query:  DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP
        D  EC +CLN+F+  E  RL+ KC H FH +CID WL++ + CPLCR+ V ++ +P
Subjt:  DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP

Arabidopsis top hitse value%identityAlignment
AT1G23980.1 RING/U-box superfamily protein4.1e-1246.55Show/hide
Query:  FSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCR
        F YKE KG++ + ++C +CL +F   +K RL+  C H FH  CID WL++   CPLCR
Subjt:  FSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCR

AT1G49220.1 RING/U-box superfamily protein5.3e-1248.33Show/hide
Query:  SYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCV
        SY         D ECVICL+ F  GE+ RL+ KC H FH  CID+WL     CP CR+C+
Subjt:  SYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCV

AT4G30400.1 RING/U-box superfamily protein2.8e-1335.58Show/hide
Query:  FELTSTDKKRNNDSESTSAVAGPMPA---LQEPEIVQ--IEAM-AFSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCP
        F LT + + R +  ++ +A+ G +     L +  + Q  I+ +  F YK   G +N  ++C +CL +F+  +K RL+ KC H FH  CID WL++   CP
Subjt:  FELTSTDKKRNNDSESTSAVAGPMPA---LQEPEIVQ--IEAM-AFSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCP

Query:  LCRS
        LCRS
Subjt:  LCRS

AT5G10380.1 RING/U-box superfamily protein2.2e-1348.21Show/hide
Query:  DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP
        D  EC +CLN+F+  E  RL+ KC H FH +CID WL++ + CPLCR+ V ++ +P
Subjt:  DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP

AT5G58580.1 TOXICOS EN LEVADURA 633.1e-1246.15Show/hide
Query:  FSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVV
        F Y+E +  E+++ ECVICL  ++ G+  R ++ CGH FH  CID WL +   CPLCRS V   V
Subjt:  FSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATCGCTGCCGTTTGTTGCCACTCCACCGGCGACACCGCCCAATTTTGAACTGACTTCGACGGATAAAAAAAGAAATAATGACTCGGAATCCACCAGTGCGGTGGC
CGGACCAATGCCGGCGTTGCAAGAGCCGGAGATTGTGCAGATTGAGGCCATGGCTTTTAGTTACAAGGAAGCTAAGGGAAGTGAGAATGATGATTATGAATGTGTGATTT
GCTTGAACCAATTTAAAGGAGGAGAAAAGTGTCGATTGATGAAAAAATGTGGCCATATATTTCACCGGAGCTGCATCGACCGGTGGCTCATGGCGGAGCGACAATGCCCA
CTTTGCCGGAGCTGTGTTTGCATCGTCGTGAAACCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCATCGCTGCCGTTTGTTGCCACTCCACCGGCGACACCGCCCAATTTTGAACTGACTTCGACGGATAAAAAAAGAAATAATGACTCGGAATCCACCAGTGCGGTGGC
CGGACCAATGCCGGCGTTGCAAGAGCCGGAGATTGTGCAGATTGAGGCCATGGCTTTTAGTTACAAGGAAGCTAAGGGAAGTGAGAATGATGATTATGAATGTGTGATTT
GCTTGAACCAATTTAAAGGAGGAGAAAAGTGTCGATTGATGAAAAAATGTGGCCATATATTTCACCGGAGCTGCATCGACCGGTGGCTCATGGCGGAGCGACAATGCCCA
CTTTGCCGGAGCTGTGTTTGCATCGTCGTGAAACCATAA
Protein sequenceShow/hide protein sequence
MSSLPFVATPPATPPNFELTSTDKKRNNDSESTSAVAGPMPALQEPEIVQIEAMAFSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCP
LCRSCVCIVVKP