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HG10021945 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10021945
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr05:18729260..18729580
RNA-Seq ExpressionHG10021945
SyntenyHG10021945
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044249 - cellular biosynthetic process (biological process)
GO:1901576 - organic substance biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEU81583.1 RNA-directed DNA polymerase, eukaryota, reverse transcriptase zinc-binding domain protein [Tanacetum cinerariifolium]3.7e-1137Show/hide
Query:  LTYLQYVDDDLLFCSWENGNLLAWWIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKMKV
        L++L YVDD ++F  W   ++     ++ +  L SGL +NISK+ + G+ ++S+E+ + A   GC    +PF+YLG PIG N S    W  L E+FK ++
Subjt:  LTYLQYVDDDLLFCSWENGNLLAWWIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKMKV
KAA0050936.1 single-stranded DNA-binding protein [Cucumis melo var. makuwa]1.3e-1142Show/hide
Query:  DLTYLQYVDDDLLFCSWENGNLLAWWIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKMK
        DLT LQYVDD L+F SWE+GNL AWW                                 R+ + GC V+TLPF YL F  GG H+ KEA  SL+E+F+ K
Subjt:  DLTYLQYVDDDLLFCSWENGNLLAWWIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKMK
RVW40734.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]4.3e-1240.59Show/hide
Query:  LTYLQYVDDDLLFCSWENGNLLAW-WIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKMK
        +++L + DD LLFC  +   L+ W W+V+Y  ++ SGL +N+ K+ II I    +EV   A+ FGCKV  LP  YLG P+G +H +   W  ++E+FK K
Subjt:  LTYLQYVDDDLLFCSWENGNLLAW-WIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKMK

Query:  V
        +
Subjt:  V
RVW86839.1 LINE-1 reverse transcriptase-like [Vitis vinifera]2.8e-1139.22Show/hide
Query:  SDLTYLQYVDDDLLFCSWENGNLLAWWIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKM
        + +++L +VDD LLFC      L+ W  VV    + SGL +N+ K+ II +    ++V   A+ FGCKV  LP TYLG P+G  H++   W  ++E+FK 
Subjt:  SDLTYLQYVDDDLLFCSWENGNLLAWWIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKM

Query:  KV
        K+
Subjt:  KV
XP_022158566.1 uncharacterized protein LOC111025019 [Momordica charantia]1.7e-1639.22Show/hide
Query:  LTYLQYVDDDLLFCSWENGNLLAWWIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKMKV
        +++L+Y DD ++FC    GNL  WW ++ L + GSGL +N++KT +IGIN+   E   +    GC+VE + F YLG P+GGNH     W+ L E+  + +
Subjt:  LTYLQYVDDDLLFCSWENGNLLAWWIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKMKV

Query:  DR
         +
Subjt:  DR
TrEMBL top hitse value%identityAlignment
A0A438DZ20 Transposon TX1 uncharacterized 149 kDa protein2.1e-1240.59Show/hide
Query:  LTYLQYVDDDLLFCSWENGNLLAW-WIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKMK
        +++L + DD LLFC  +   L+ W W+V+Y  ++ SGL +N+ K+ II I    +EV   A+ FGCKV  LP  YLG P+G +H +   W  ++E+FK K
Subjt:  LTYLQYVDDDLLFCSWENGNLLAW-WIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKMK

Query:  V
        +
Subjt:  V
A0A438HQW7 LINE-1 reverse transcriptase-like1.4e-1139.22Show/hide
Query:  SDLTYLQYVDDDLLFCSWENGNLLAWWIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKM
        + +++L +VDD LLFC      L+ W  VV    + SGL +N+ K+ II +    ++V   A+ FGCKV  LP TYLG P+G  H++   W  ++E+FK 
Subjt:  SDLTYLQYVDDDLLFCSWENGNLLAWWIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKM

Query:  KV
        K+
Subjt:  KV
A0A5D3CEJ3 Single-stranded DNA-binding protein6.1e-1242Show/hide
Query:  DLTYLQYVDDDLLFCSWENGNLLAWWIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKMK
        DLT LQYVDD L+F SWE+GNL AWW                                 R+ + GC V+TLPF YL F  GG H+ KEA  SL+E+F+ K
Subjt:  DLTYLQYVDDDLLFCSWENGNLLAWWIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKMK
A0A6J1E196 uncharacterized protein LOC1110250198.3e-1739.22Show/hide
Query:  LTYLQYVDDDLLFCSWENGNLLAWWIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKMKV
        +++L+Y DD ++FC    GNL  WW ++ L + GSGL +N++KT +IGIN+   E   +    GC+VE + F YLG P+GGNH     W+ L E+  + +
Subjt:  LTYLQYVDDDLLFCSWENGNLLAWWIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKMKV

Query:  DR
         +
Subjt:  DR
A0A6L2N5Z5 RNA-directed DNA polymerase, eukaryota, reverse transcriptase zinc-binding domain protein1.8e-1137Show/hide
Query:  LTYLQYVDDDLLFCSWENGNLLAWWIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKMKV
        L++L YVDD ++F  W   ++     ++ +  L SGL +NISK+ + G+ ++S+E+ + A   GC    +PF+YLG PIG N S    W  L E+FK ++
Subjt:  LTYLQYVDDDLLFCSWENGNLLAWWIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKMKV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTCAGATTTAACCTATCTCCAATATGTTGATGACGATCTTCTTTTTTGCTCTTGGGAGAATGGCAACCTTTTGGCTTGGTGGATTGTTGTCTACCTATTACTTTT
GGGGTCGGGGTTGACTCTTAATATTTCCAAGACCTTTATCATTGGAATTAACCTTAATAGTAAGGAAGTGGGTCTTCGTGCCTCGAATTTTGGGTGTAAGGTGGAAACTC
TCCCGTTTACGTATTTGGGCTTTCCTATAGGGGGAAATCACAGTGCTAAGGAAGCTTGGAAATCTCTTGACGAGCAGTTTAAAATGAAGGTGGACAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGACCTCAGATTTAACCTATCTCCAATATGTTGATGACGATCTTCTTTTTTGCTCTTGGGAGAATGGCAACCTTTTGGCTTGGTGGATTGTTGTCTACCTATTACTTTT
GGGGTCGGGGTTGACTCTTAATATTTCCAAGACCTTTATCATTGGAATTAACCTTAATAGTAAGGAAGTGGGTCTTCGTGCCTCGAATTTTGGGTGTAAGGTGGAAACTC
TCCCGTTTACGTATTTGGGCTTTCCTATAGGGGGAAATCACAGTGCTAAGGAAGCTTGGAAATCTCTTGACGAGCAGTTTAAAATGAAGGTGGACAGATGA
Protein sequenceShow/hide protein sequence
MTSDLTYLQYVDDDLLFCSWENGNLLAWWIVVYLLLLGSGLTLNISKTFIIGINLNSKEVGLRASNFGCKVETLPFTYLGFPIGGNHSAKEAWKSLDEQFKMKVDR