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HG10021976 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10021976
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCold-inducible RNA binding protein
Genome locationChr05:19236867..19237308
RNA-Seq ExpressionHG10021976
SyntenyHG10021976
Gene Ontology termsGO:0048026 - positive regulation of mRNA splicing, via spliceosome (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0017069 - snRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033911.1 cold-inducible RNA-binding protein B [Cucumis melo var. makuwa]1.8e-2790.14Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR
        MANRLGS+LFISRLSSYTTIERL+SLFSPFGS+S+ARL+RDP+TQRPKGFGFVTFQSPVEAKKALQAM+GR
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR

KAG6607208.1 Cold-inducible RNA-binding protein B, partial [Cucurbita argyrosperma subsp. sororia]4.8e-2891.67Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV
        MANRLG+QLFISRLSSYTTIERLE+LFSPFGSVSEARL+RDPKTQRPKGFGFVTFQSP EAKKALQAM+GR+
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV

XP_008457543.1 PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo]8.2e-2888.89Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV
        MANRLGS+LFISRLSSYTTIERL+SLFSPFGS+S+ARL+RDP+TQRPKGFGFVTFQSPVEAKKALQAM+GR+
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV

XP_022949004.1 cold-inducible RNA-binding protein B-like [Cucurbita moschata]4.8e-2891.67Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV
        MANRLG+QLFISRLSSYTTIERLE+LFSPFGSVSEARL+RDPKTQRPKGFGFVTFQSP EAKKALQAM+GR+
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV

XP_038895198.1 small RNA-binding protein 11, chloroplastic-like [Benincasa hispida]2.0e-3493.9Show/hide
Query:  MQNRPSDLEGMANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV
        MQN  SDLEGMANR+GSQLFISRLSSYTTIERLESLFSPFGSVSEARL+RDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR+
Subjt:  MQNRPSDLEGMANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV

TrEMBL top hitse value%identityAlignment
A0A0A0KQ26 Cold-inducible RNA binding protein4.4e-2784.72Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV
        MANRLGS+LFISRLSSYTT+ERL++LFSPFGS+SEARL+RDPKT+RPKGFGFVTFQSP EAKKAL+AM+GR+
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV

A0A1S3C5W5 cold-inducible RNA-binding protein B4.0e-2888.89Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV
        MANRLGS+LFISRLSSYTTIERL+SLFSPFGS+S+ARL+RDP+TQRPKGFGFVTFQSPVEAKKALQAM+GR+
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV

A0A5D3BNH4 Cold-inducible RNA-binding protein B8.8e-2890.14Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR
        MANRLGS+LFISRLSSYTTIERL+SLFSPFGS+S+ARL+RDP+TQRPKGFGFVTFQSPVEAKKALQAM+GR
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR

A0A6J1GBJ9 cold-inducible RNA-binding protein B-like2.3e-2891.67Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV
        MANRLG+QLFISRLSSYTTIERLE+LFSPFGSVSEARL+RDPKTQRPKGFGFVTFQSP EAKKALQAM+GR+
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV

A0A6J1KF23 cold-inducible RNA-binding protein B-like2.3e-2891.67Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV
        MANRLG+QLFISRLSSYTTIERLE+LFSPFGSVSEARL+RDPKTQRPKGFGFVTFQSP EAKKALQAM+GR+
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV

SwissProt top hitse value%identityAlignment
P60824 Cold-inducible RNA-binding protein2.1e-1048.44Show/hide
Query:  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR
        +LF+  LS  T  + LE +FS +G +SE  +V+D +TQR +GFGFVTF++  +AK A+ AMNG+
Subjt:  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR

P60826 Cold-inducible RNA-binding protein2.1e-1048.44Show/hide
Query:  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR
        +LF+  LS  T  + LE +FS +G +SE  +V+D +TQR +GFGFVTF++  +AK A+ AMNG+
Subjt:  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR

Q14011 Cold-inducible RNA-binding protein2.1e-1048.44Show/hide
Query:  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR
        +LF+  LS  T  + LE +FS +G +SE  +V+D +TQR +GFGFVTF++  +AK A+ AMNG+
Subjt:  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR

Q28IQ9 Cold-inducible RNA-binding protein3.2e-1148.44Show/hide
Query:  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR
        +LF+  L+  TT E LE +FS +G V+E  +V+D +++R +GFGFVTF++P +AK A+ AMNG+
Subjt:  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR

Q9DED4 Cold-inducible RNA-binding protein B3.2e-1150Show/hide
Query:  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR
        +LFI  L+  T  E LE +FS +G +SE  +V+D +T+R +GFGFVTF++P +AK A+ AMNG+
Subjt:  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR

Arabidopsis top hitse value%identityAlignment
AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.4e-0943.75Show/hide
Query:  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR
        +LF+S LS  TT E+L+  F+ FG + +AR++ D  + R KGFGFVT+ +  +A+KA   MN +
Subjt:  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR

AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.6e-2159.72Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV
        MA R+ +QLF+SRLS+YTT + L  LFSPFG + EARL+RD +TQRPKGFGF+TF S  +A+KAL++++G++
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV

AT4G13860.1 RNA-binding (RRM/RBD/RNP motifs) family protein9.1e-0938.81Show/hide
Query:  LGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR
        + +++++  LS  TT + L   FS +G+V +A ++RD  T R +GFGFVT+ S  EA+ A+  M+G+
Subjt:  LGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR

AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein2.8e-1050.75Show/hide
Query:  LGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR
        + S+LFI  LS  TT + L   FS  G V EA++V D  + R KGFGFVTF S  EA+KAL   NG+
Subjt:  LGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR

AT5G59860.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.6e-1355.74Show/hide
Query:  SRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV
        S LS+YTT + L  LF+PF     ARL++D +TQRPKGFGF+TF+S  +A+KAL+A+NG++
Subjt:  SRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAATCGCCCGTCGGATTTGGAAGGAATGGCTAACAGACTCGGCTCGCAGCTGTTCATCAGCAGACTGTCATCATACACAACGATCGAACGCCTTGAGAGCCTGTT
TTCACCCTTCGGTTCAGTCTCTGAAGCTCGGCTAGTTCGTGATCCGAAAACCCAGAGGCCCAAAGGGTTCGGTTTTGTCACATTTCAATCCCCGGTTGAGGCGAAGAAGG
CTCTTCAAGCCATGAATGGTCGGGTATGTGTCCTCCCCTGCTTACGCACATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAATCGCCCGTCGGATTTGGAAGGAATGGCTAACAGACTCGGCTCGCAGCTGTTCATCAGCAGACTGTCATCATACACAACGATCGAACGCCTTGAGAGCCTGTT
TTCACCCTTCGGTTCAGTCTCTGAAGCTCGGCTAGTTCGTGATCCGAAAACCCAGAGGCCCAAAGGGTTCGGTTTTGTCACATTTCAATCCCCGGTTGAGGCGAAGAAGG
CTCTTCAAGCCATGAATGGTCGGGTATGTGTCCTCCCCTGCTTACGCACATAA
Protein sequenceShow/hide protein sequence
MQNRPSDLEGMANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRVCVLPCLRT