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HG10021987 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10021987
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCR4-NOT transcription complex subunit 3-like isoform X2
Genome locationChr05:19372092..19372445
RNA-Seq ExpressionHG10021987
SyntenyHG10021987
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0030015 - CCR4-NOT core complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051276.1 general negative regulator of transcription subunit 3 [Cucumis melo var. makuwa]2.6e-1873.33Show/hide
Query:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGRG
        S+NG V G GLS TS ILP SS VRA+LETT + N+S VNMPTSAKD++I SF   KLSPSFSDSGLVRGGMGRG
Subjt:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGRG
KAG7019318.1 CCR4-NOT transcription complex subunit 3 [Cucurbita argyrosperma subsp. argyrosperma]8.5e-1771.62Show/hide
Query:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGR
        S+NG   G  LSATS IL  SS VRA+LETTG+ N+S VNMPTSAKD++I SF   KLSPSFSDSGLVRGGMGR
Subjt:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGR
XP_008465329.1 PREDICTED: general negative regulator of transcription subunit 3 [Cucumis melo]2.6e-1873.33Show/hide
Query:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGRG
        S+NG V G GLS TS ILP SS VRA+LETT + N+S VNMPTSAKD++I SF   KLSPSFSDSGLVRGGMGRG
Subjt:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGRG
XP_023526665.1 CCR4-NOT transcription complex subunit 3-like isoform X2 [Cucurbita pepo subsp. pepo]8.5e-1771.62Show/hide
Query:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGR
        S+NG   G  LSATS IL  SS VRA+LETTG+ N+S VNMPTSAKD++I SF   KLSPSFSDSGLVRGGMGR
Subjt:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGR
XP_038904035.1 general negative regulator of transcription subunit 3 [Benincasa hispida]2.4e-1974.67Show/hide
Query:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGRG
        S+NG V G GLS+TS ILP SS VRA+LETTG+ N+S VNMPTSAKD++I SF   KLSPSFSDSGLVRGGMGRG
Subjt:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGRG
TrEMBL top hitse value%identityAlignment
A0A1S3CNL9 general negative regulator of transcription subunit 31.3e-1873.33Show/hide
Query:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGRG
        S+NG V G GLS TS ILP SS VRA+LETT + N+S VNMPTSAKD++I SF   KLSPSFSDSGLVRGGMGRG
Subjt:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGRG
A0A5A7UAP5 General negative regulator of transcription subunit 31.3e-1873.33Show/hide
Query:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGRG
        S+NG V G GLS TS ILP SS VRA+LETT + N+S VNMPTSAKD++I SF   KLSPSFSDSGLVRGGMGRG
Subjt:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGRG
A0A6J1EY06 CCR4-NOT transcription complex subunit 3-like isoform X14.1e-1771.62Show/hide
Query:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGR
        S+NG   G  LSATS IL  SS VRA+LETTG+ N+S VNMPTSAKD++I SF   KLSPSFSDSGLVRGGMGR
Subjt:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGR
A0A6J1F334 CCR4-NOT transcription complex subunit 3-like isoform X24.1e-1771.62Show/hide
Query:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGR
        S+NG   G  LSATS IL  SS VRA+LETTG+ N+S VNMPTSAKD++I SF   KLSPSFSDSGLVRGGMGR
Subjt:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGR
A0A6J1IGZ7 general negative regulator of transcription subunit 3-like isoform X15.3e-1770.27Show/hide
Query:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGR
        S+NG   G  LS TS ILP SS VRA+LETTG+ N+S VNMP SAKD++I SF   KLSPSFSDSGLVRGGMGR
Subjt:  SINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLVRGGMGR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGTTCTAGAGATATTGATTGGACATTCGTGGAAGCTTATGGCAAATCTGGAGGATTGATGATTCTATGGGATGAAAGAAAGCTTTCAGTTCTTAATGTCCTAAG
AGGAGGATATACTCTTTCAATAAATGGTGTAGTGCCTGGGTTTGGCTTATCCGCTACATCAGTTATTCTTCCTAGTTCAAGTGTTGTTCGTGCTTTATTAGAGACTACGG
GTTCTCATAATGCATCTCTTGTAAATATGCCCACTTCTGCAAAGGATGATAAAATTGTTAGCTTCCTAGACTGTAAACTGTCTCCATCATTTTCCGATTCTGGACTTGTT
AGGGGTGGCATGGGAAGAGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAGTTCTAGAGATATTGATTGGACATTCGTGGAAGCTTATGGCAAATCTGGAGGATTGATGATTCTATGGGATGAAAGAAAGCTTTCAGTTCTTAATGTCCTAAG
AGGAGGATATACTCTTTCAATAAATGGTGTAGTGCCTGGGTTTGGCTTATCCGCTACATCAGTTATTCTTCCTAGTTCAAGTGTTGTTCGTGCTTTATTAGAGACTACGG
GTTCTCATAATGCATCTCTTGTAAATATGCCCACTTCTGCAAAGGATGATAAAATTGTTAGCTTCCTAGACTGTAAACTGTCTCCATCATTTTCCGATTCTGGACTTGTT
AGGGGTGGCATGGGAAGAGGGTGA
Protein sequenceShow/hide protein sequence
MWSSRDIDWTFVEAYGKSGGLMILWDERKLSVLNVLRGGYTLSINGVVPGFGLSATSVILPSSSVVRALLETTGSHNASLVNMPTSAKDDKIVSFLDCKLSPSFSDSGLV
RGGMGRG