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HG10022089 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10022089
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationChr05:20718240..20718629
RNA-Seq ExpressionHG10022089
SyntenyHG10022089
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0016798 - hydrolase activity, acting on glycosyl bonds (molecular function)
InterPro domainsIPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN52445.1 hypothetical protein Csa_008476 [Cucumis sativus]1.2e-2168.89Show/hide
Query:  MKLFVLLLAIFLQSLQI--SGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYS--SPIMAVPRGNSFLLQPFTLDGSHCKSTNITIV
        M+LF L+L I LQ LQI  S KTFNV+ YGA+G+G  EDTQAFLDAWKA CKSS S  SPIM VP G SFLLQPFTLDG  CKST   I+
Subjt:  MKLFVLLLAIFLQSLQI--SGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYS--SPIMAVPRGNSFLLQPFTLDGSHCKSTNITIV

XP_016902407.1 PREDICTED: probable polygalacturonase At1g80170 [Cucumis melo]1.3e-2065.22Show/hide
Query:  MKLFVLLLAIFLQSLQI----SGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYS--SPIMAVPRGNSFLLQPFTLDGSHCKSTNITIV
        M+LFVL+L   L+ LQI    S +TFNV+ YGA+G+G  EDTQAFLDAWKA CKSS S  SPIM VP G SFLLQPFTLDG  CKST   I+
Subjt:  MKLFVLLLAIFLQSLQI----SGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYS--SPIMAVPRGNSFLLQPFTLDGSHCKSTNITIV

XP_022133622.1 probable polygalacturonase At1g80170 [Momordica charantia]7.0e-2269.77Show/hide
Query:  FVLLLAIFLQSLQ-ISGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKS-SYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITIVV
        FVL+LAIF Q  Q IS +TFNV+ YGA+GNG  EDTQAFL+AWKATCKS S SSP M VP G SFLLQPFT +G  CKS NI IV+
Subjt:  FVLLLAIFLQSLQ-ISGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKS-SYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITIVV

XP_031741769.1 probable polygalacturonase At1g80170, partial [Cucumis sativus]2.6e-1671.21Show/hide
Query:  NVVKYGAIGNGVNEDTQAFLDAWKATCKSSYS--SPIMAVPRGNSFLLQPFTLDGSHCKSTNITIV
        NV+ YGA+G+G  EDTQAFLDAWKA CKSS S  SPIM VP G SFLLQPFTLDG  CKST   I+
Subjt:  NVVKYGAIGNGVNEDTQAFLDAWKATCKSSYS--SPIMAVPRGNSFLLQPFTLDGSHCKSTNITIV

XP_038889205.1 probable polygalacturonase At1g80170 [Benincasa hispida]9.8e-2480.56Show/hide
Query:  QISGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITIVV
        Q   KTFNVV YGAIGNG  EDTQAFLDAWKATC SS SSPIM VP GNSFLLQPFTLDGS+CKST+I+IV+
Subjt:  QISGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITIVV

TrEMBL top hitse value%identityAlignment
A0A0A0KS58 Uncharacterized protein5.8e-2268.89Show/hide
Query:  MKLFVLLLAIFLQSLQI--SGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYS--SPIMAVPRGNSFLLQPFTLDGSHCKSTNITIV
        M+LF L+L I LQ LQI  S KTFNV+ YGA+G+G  EDTQAFLDAWKA CKSS S  SPIM VP G SFLLQPFTLDG  CKST   I+
Subjt:  MKLFVLLLAIFLQSLQI--SGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYS--SPIMAVPRGNSFLLQPFTLDGSHCKSTNITIV

A0A1S4E2F6 probable polygalacturonase At1g801706.4e-2165.22Show/hide
Query:  MKLFVLLLAIFLQSLQI----SGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYS--SPIMAVPRGNSFLLQPFTLDGSHCKSTNITIV
        M+LFVL+L   L+ LQI    S +TFNV+ YGA+G+G  EDTQAFLDAWKA CKSS S  SPIM VP G SFLLQPFTLDG  CKST   I+
Subjt:  MKLFVLLLAIFLQSLQI----SGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYS--SPIMAVPRGNSFLLQPFTLDGSHCKSTNITIV

A0A2N9EX52 Uncharacterized protein1.8e-1554.95Show/hide
Query:  LFVLLLAIFLQSLQISG------KTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITIVV
        L VL+LA+ + S Q  G      K +NVV YGA+G+G+ +DTQAF DAW ATC+SS S P M VP+G +FLLQP T +GS CKS NIT+ +
Subjt:  LFVLLLAIFLQSLQISG------KTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITIVV

A0A2N9H8U8 Uncharacterized protein1.8e-1556.18Show/hide
Query:  LFVLLLAIFLQSLQISG------KTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITI
        L VL+LA+ + S Q  G      K +NVV YGA+G+G+ +DTQAF DAW ATC+SS S P M VP+G +FLLQP T +GS CKS NIT+
Subjt:  LFVLLLAIFLQSLQISG------KTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITI

A0A6J1BX76 probable polygalacturonase At1g801703.4e-2269.77Show/hide
Query:  FVLLLAIFLQSLQ-ISGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKS-SYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITIVV
        FVL+LAIF Q  Q IS +TFNV+ YGA+GNG  EDTQAFL+AWKATCKS S SSP M VP G SFLLQPFT +G  CKS NI IV+
Subjt:  FVLLLAIFLQSLQ-ISGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKS-SYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITIVV

SwissProt top hitse value%identityAlignment
P48978 Polygalacturonase5.6e-0647.54Show/hide
Query:  KTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKS
        KT +V  +GA GNG  +DTQAF+ AWKA C SS  + ++ VP+ N +L++P    G  CKS
Subjt:  KTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKS

Q8RY29 Polygalacturonase ADPG25.6e-0639.71Show/hide
Query:  LAIFLQSLQISGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDG
        L  F+++   +  T +V  +GA G+G  +DTQAF++AWK  C SS  +  + VP+GN++LL+   L G
Subjt:  LAIFLQSLQISGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDG

Q949Z1 Polygalacturonase At1g481002.1e-0540.32Show/hide
Query:  SGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCK
        SG  F+V  +GA+G+G  +DT AF DAWKA C  +  S ++  P G  F +   T+    CK
Subjt:  SGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCK

Q94AJ5 Probable polygalacturonase At1g801705.1e-0744.44Show/hide
Query:  SGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKS
        S +  +V  +GA GNGV +DT+AF DAWK  C S   + I+ VP   + LL+P  L G  CK+
Subjt:  SGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKS

Q9LW07 Probable polygalacturonase At3g157201.9e-0938.1Show/hide
Query:  KLFVLLLAIFLQSLQISGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITI
        K + L  ++F   +  S    +V ++GA+G+GV +D+QAFL AW+A C  +     + VP G +F+LQP    GS CKST + +
Subjt:  KLFVLLLAIFLQSLQISGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITI

Arabidopsis top hitse value%identityAlignment
AT3G15720.1 Pectin lyase-like superfamily protein1.3e-1038.1Show/hide
Query:  KLFVLLLAIFLQSLQISGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITI
        K + L  ++F   +  S    +V ++GA+G+GV +D+QAFL AW+A C  +     + VP G +F+LQP    GS CKST + +
Subjt:  KLFVLLLAIFLQSLQISGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITI

AT3G15720.2 Pectin lyase-like superfamily protein1.3e-1038.1Show/hide
Query:  KLFVLLLAIFLQSLQISGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITI
        K + L  ++F   +  S    +V ++GA+G+GV +D+QAFL AW+A C  +     + VP G +F+LQP    GS CKST + +
Subjt:  KLFVLLLAIFLQSLQISGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITI

AT5G27530.1 Pectin lyase-like superfamily protein7.8e-1138.55Show/hide
Query:  LFVLLLAIFLQSLQISGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITI
        L + +L  F+    ++G+ +NV+K+GA G+G  +D+ AFL AW ATC    +   + +P G ++LLQP    G  CKST+I +
Subjt:  LFVLLLAIFLQSLQISGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITI

AT5G39910.1 Pectin lyase-like superfamily protein1.1e-1243.48Show/hide
Query:  FVLLLAIF--LQSLQI------SGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITIVV
        F+L L +F   QS+Q           FNV+ YGAIG+G ++D++AF DAW+ TC    S  IM +P GN+FLLQP    G  CKS  I + +
Subjt:  FVLLLAIF--LQSLQI------SGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITIVV

AT5G44840.1 Pectin lyase-like superfamily protein3.1e-1237.5Show/hide
Query:  LLLAIFLQSLQISGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITI
        + L   L S+ ++G+ ++V+++GA GNG+ +D++AF+ AW A C S  +S    +P   +FLLQP T  G  CKS ++ +
Subjt:  LLLAIFLQSLQISGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTATTTGTTCTTCTTTTGGCCATTTTTCTTCAATCTCTTCAAATTTCAGGAAAAACTTTCAATGTAGTCAAGTATGGAGCTATAGGGAATGGGGTAAATGAAGA
CACTCAAGCTTTTCTTGATGCTTGGAAAGCTACATGCAAATCTTCATATTCTTCTCCTATAATGGCGGTTCCTCGTGGCAACTCATTTTTACTTCAGCCTTTCACTTTAG
ACGGTAGCCATTGCAAGTCTACAAATATTACCATTGTGGTTTGGATTCTTTTACAGATCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAATTATTTGTTCTTCTTTTGGCCATTTTTCTTCAATCTCTTCAAATTTCAGGAAAAACTTTCAATGTAGTCAAGTATGGAGCTATAGGGAATGGGGTAAATGAAGA
CACTCAAGCTTTTCTTGATGCTTGGAAAGCTACATGCAAATCTTCATATTCTTCTCCTATAATGGCGGTTCCTCGTGGCAACTCATTTTTACTTCAGCCTTTCACTTTAG
ACGGTAGCCATTGCAAGTCTACAAATATTACCATTGTGGTTTGGATTCTTTTACAGATCTTTTGA
Protein sequenceShow/hide protein sequence
MKLFVLLLAIFLQSLQISGKTFNVVKYGAIGNGVNEDTQAFLDAWKATCKSSYSSPIMAVPRGNSFLLQPFTLDGSHCKSTNITIVVWILLQIF