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HG10022148 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10022148
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNA exonuclease 4
Genome locationChr05:21325546..21329402
RNA-Seq ExpressionHG10022148
SyntenyHG10022148
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8648890.1 hypothetical protein Csa_008189 [Cucumis sativus]3.1e-6556.32Show/hide
Query:  MNPLVLFARNIVDLLILLENISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF---
        MN LV FARNIVDLLILLENISLGLLARFANLGIRDGSTVID+GRTRGSGA+ALACKYVGGGSDGS+DICAK+CLIDE ENVIFYSYVKP+  VTN+   
Subjt:  MNPLVLFARNIVDLLILLENISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF---

Query:  ----------------------------------------------------------------------------------------------SFEECI
                                                                                                       +EECI
Subjt:  ----------------------------------------------------------------------------------------------SFEECI

Query:  VGMRLYKRMRSQVHRIEKHPMASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD
        V MRLYKRMRSQVHR E +PMASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD
Subjt:  VGMRLYKRMRSQVHRIEKHPMASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD

KAG6578645.1 hypothetical protein SDJN03_23093, partial [Cucurbita argyrosperma subsp. sororia]1.8e-5758.88Show/hide
Query:  ISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF-----------------------
        ++ GLLAR ANLGIRDGST ID GRTRGSG VALACKYVGGG DGSLD+CAK+CLIDESENVIFYSYVKPIIPVTN+                       
Subjt:  ISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF-----------------------

Query:  -----------------------------------------------SFEECIVGMRLYKRMRSQVHRIEKHPMASDPQNKNNFAIWRENELQRMSPEQM
                                                        +EEC+ GMRLYKRMRSQVHRIE HPMASDPQNKNNFA WRENEL+RMSPEQM
Subjt:  -----------------------------------------------SFEECIVGMRLYKRMRSQVHRIEKHPMASDPQNKNNFAIWRENELQRMSPEQM

Query:  LEISRSDYYCWCMD
        LEISRSDYYCWCMD
Subjt:  LEISRSDYYCWCMD

KAG7016187.1 REX4, partial [Cucurbita argyrosperma subsp. argyrosperma]8.4e-5553.59Show/hide
Query:  SLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF------------------------
        S GLLAR ANLGIRDGST ID GRTRGSG VALACKYVGGG DGSLD+CAK+CLIDESENVIFYSYVKPIIPVTN+                        
Subjt:  SLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF------------------------

Query:  ----------------------------------------------------------------------SFEECIVGMRLYKRMRSQVHRIEKHPMASD
                                                                               +EEC+ GMRLYKRMRSQVHRIE HPMASD
Subjt:  ----------------------------------------------------------------------SFEECIVGMRLYKRMRSQVHRIEKHPMASD

Query:  PQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD
        PQNKNNFA WRENEL+RMSPEQMLEISRSDYYCWCMD
Subjt:  PQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD

XP_011656270.1 RNA exonuclease 4 [Cucumis sativus]1.7e-5552.28Show/hide
Query:  ISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF-----------------------
        ++ GLLARFANLGIRDGSTVID+GRTRGSGA+ALACKYVGGGSDGS+DICAK+CLIDE ENVIFYSYVKP+  VTN+                       
Subjt:  ISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF-----------------------

Query:  --------------------------------------------------------------------------SFEECIVGMRLYKRMRSQVHRIEKHP
                                                                                   +EECIV MRLYKRMRSQVHR E +P
Subjt:  --------------------------------------------------------------------------SFEECIVGMRLYKRMRSQVHRIEKHP

Query:  MASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD
        MASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD
Subjt:  MASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD

XP_022938612.1 RNA exonuclease 4-like [Cucurbita moschata]9.3e-5451.87Show/hide
Query:  ISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF-----------------------
        ++ GLLAR ANLGIRDGST ID GRTRGSG VALACKYVGGG DGSLD+CAK+CLIDESENVIFYSYVKPIIPVTN+                       
Subjt:  ISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF-----------------------

Query:  --------------------------------------------------------------------------SFEECIVGMRLYKRMRSQVHRIEKHP
                                                                                   +EEC+ GMRLYKRMRSQVHRIE HP
Subjt:  --------------------------------------------------------------------------SFEECIVGMRLYKRMRSQVHRIEKHP

Query:  MASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD
        MASDPQNKNNFA WRE+EL+RMSPEQMLEISRSDYYCWCMD
Subjt:  MASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD

TrEMBL top hitse value%identityAlignment
A0A5D3BS62 RNA exonuclease 41.4e-5049.11Show/hide
Query:  SLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF------------------------
        S GLLARFANLGIRDGST+ID+GRTRGSGA+ALACKYVGGGSDGSLDICAK+CL+DE ENVIFYSYVKPIIPVTN+                        
Subjt:  SLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF------------------------

Query:  ---------------------------------------------------------SFEECIVGMRLYKRMRSQVHRIEKHPMASDPQNKNNFAIWREN
                                                                  +EEC+  MRLY +M+SQVH+ E++P+ASDP NK NFAIW++ 
Subjt:  ---------------------------------------------------------SFEECIVGMRLYKRMRSQVHRIEKHPMASDPQNKNNFAIWREN

Query:  ELQRMSPEQMLEISRSDYYCWCMD
        EL++M+P+Q+L+ISRSDYYCWC+D
Subjt:  ELQRMSPEQMLEISRSDYYCWCMD

A0A6J1BXL4 RNA exonuclease 43.0e-5047.28Show/hide
Query:  ISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNFSF---------------------
        ++ GLLAR ANLGIRD S V+D GR R +G VALACKYVGGG DGSLDICAK+CLIDE+ENVIFYSYVKPIIPVTN+ F                     
Subjt:  ISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNFSF---------------------

Query:  --------------------------------------------------------------------------EECIVGMRLYKRMRSQVHRIEKHPMA
                                                                                  E+C+  MRLYKRMRSQVH+IE +PMA
Subjt:  --------------------------------------------------------------------------EECIVGMRLYKRMRSQVHRIEKHPMA

Query:  SDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD
        SDPQNKNNF IWR+NEL+RM+PE ML+ISRSDYYCWC+D
Subjt:  SDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD

A0A6J1BZE0 RNA exonuclease 43.0e-5047.28Show/hide
Query:  ISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNFSF---------------------
        ++ GLLAR ANLGIRD S V+D GR R +G VALACKYVGGG DGSLDICAK+CLIDE+ENVIFYSYVKPIIPVTN+ F                     
Subjt:  ISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNFSF---------------------

Query:  --------------------------------------------------------------------------EECIVGMRLYKRMRSQVHRIEKHPMA
                                                                                  E+C+  MRLYKRMRSQVH+IE +PMA
Subjt:  --------------------------------------------------------------------------EECIVGMRLYKRMRSQVHRIEKHPMA

Query:  SDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD
        SDPQNKNNF IWR+NEL+RM+PE ML+ISRSDYYCWC+D
Subjt:  SDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD

A0A6J1FEK0 RNA exonuclease 44.5e-5451.87Show/hide
Query:  ISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF-----------------------
        ++ GLLAR ANLGIRDGST ID GRTRGSG VALACKYVGGG DGSLD+CAK+CLIDESENVIFYSYVKPIIPVTN+                       
Subjt:  ISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF-----------------------

Query:  --------------------------------------------------------------------------SFEECIVGMRLYKRMRSQVHRIEKHP
                                                                                   +EEC+ GMRLYKRMRSQVHRIE HP
Subjt:  --------------------------------------------------------------------------SFEECIVGMRLYKRMRSQVHRIEKHP

Query:  MASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD
        MASDPQNKNNFA WRE+EL+RMSPEQMLEISRSDYYCWCMD
Subjt:  MASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD

A0A6J1JZ30 RNA exonuclease 41.7e-5351.45Show/hide
Query:  ISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF-----------------------
        ++ GLLAR ANLGIRDGST ID GRTRGSG VALACKYVGGG DGSLD+CAK+CLIDESENVIFYSYVKP IPVTN+                       
Subjt:  ISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF-----------------------

Query:  --------------------------------------------------------------------------SFEECIVGMRLYKRMRSQVHRIEKHP
                                                                                   +EEC+ GMRLYKRMRSQVHRIE HP
Subjt:  --------------------------------------------------------------------------SFEECIVGMRLYKRMRSQVHRIEKHP

Query:  MASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD
        MASDPQNKNNFA WRE+EL+RMSPEQMLEISRSDYYCWCMD
Subjt:  MASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G48100.1 Exonuclease family protein1.3e-1323.36Show/hide
Query:  AVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNFS----------------------------------------------------
        A+AL C+ VGGG+DG++D CA +CL+D+ ENVIF ++V+P++PVT++                                                     
Subjt:  AVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNFS----------------------------------------------------

Query:  ------------------------------------------------FEECIVGMRLYKRMRSQVHRIEKHPMASDPQNKNNFAIWRENELQRMSPEQM
                                                        +E+C+  MRLYKRMR Q H      + S     N     ++++L++M+ E++
Subjt:  ------------------------------------------------FEECIVGMRLYKRMRSQVHRIEKHPMASDPQNKNNFAIWRENELQRMSPEQM

Query:  LEISRSDYYCWCMD
         + S S+Y CWC+D
Subjt:  LEISRSDYYCWCMD

AT2G48100.2 Exonuclease family protein1.3e-1323.36Show/hide
Query:  AVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNFS----------------------------------------------------
        A+AL C+ VGGG+DG++D CA +CL+D+ ENVIF ++V+P++PVT++                                                     
Subjt:  AVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNFS----------------------------------------------------

Query:  ------------------------------------------------FEECIVGMRLYKRMRSQVHRIEKHPMASDPQNKNNFAIWRENELQRMSPEQM
                                                        +E+C+  MRLYKRMR Q H      + S     N     ++++L++M+ E++
Subjt:  ------------------------------------------------FEECIVGMRLYKRMRSQVHRIEKHPMASDPQNKNNFAIWRENELQRMSPEQM

Query:  LEISRSDYYCWCMD
         + S S+Y CWC+D
Subjt:  LEISRSDYYCWCMD

AT2G48100.3 Exonuclease family protein1.3e-1323.36Show/hide
Query:  AVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNFS----------------------------------------------------
        A+AL C+ VGGG+DG++D CA +CL+D+ ENVIF ++V+P++PVT++                                                     
Subjt:  AVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNFS----------------------------------------------------

Query:  ------------------------------------------------FEECIVGMRLYKRMRSQVHRIEKHPMASDPQNKNNFAIWRENELQRMSPEQM
                                                        +E+C+  MRLYKRMR Q H      + S     N     ++++L++M+ E++
Subjt:  ------------------------------------------------FEECIVGMRLYKRMRSQVHRIEKHPMASDPQNKNNFAIWRENELQRMSPEQM

Query:  LEISRSDYYCWCMD
         + S S+Y CWC+D
Subjt:  LEISRSDYYCWCMD

AT3G27970.1 Exonuclease family protein3.7e-3232.27Show/hide
Query:  NISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF----------------------
        +++ GL  R A LG+RD   +ID   +R    VAL+CK VGGGSDGSLD+CA++C+ DES+NVIF++YVKP + VT++                      
Subjt:  NISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF----------------------

Query:  ------------------------------------------------------------------------------------SFEECIVGMRLYKRMR
                                                                                             +E+C+  MRLY RMR
Subjt:  ------------------------------------------------------------------------------------SFEECIVGMRLYKRMR

Query:  SQVHRIEKHPMASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD
         Q H+IE +P+A+D QN++N   WR++E +RMSP++ML ISRSDYYCWC+D
Subjt:  SQVHRIEKHPMASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD

AT5G40310.1 Exonuclease family protein1.2e-3836.12Show/hide
Query:  ARNIVDLLILLENISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF----------
        AR I      L N++ GL+ R A LG+R+ ST ID   +R    VAL+CK VGGGSDGSLD+CA++C+ DESENV+F++YVKP IPVTN+          
Subjt:  ARNIVDLLILLENISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNF----------

Query:  ------------------------------------------------------------------------------------------------SFEE
                                                                                                         +E+
Subjt:  ------------------------------------------------------------------------------------------------SFEE

Query:  CIVGMRLYKRMRSQVHRIEKHPMASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD
        C+  MRLY RMR Q HR E +P+ASD QN NNFA WR+NEL+RMSPE++L++SRSDYYCWC+D
Subjt:  CIVGMRLYKRMRSQVHRIEKHPMASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCCACTTGTGCTATTTGCAAGAAACATTGTCGATCTCTTGATTCTCTTAGAGAACATCTCATTGGGACTTCTTGCTCGTTTCGCCAACTTGGGAATTCGTGACGG
TTCGACCGTCATCGATAATGGAAGAACTCGAGGCTCGGGCGCCGTGGCGTTAGCTTGCAAATATGTAGGTGGGGGCAGTGATGGGTCGCTGGACATATGTGCCAAGATTT
GCCTTATTGATGAGAGCGAAAATGTCATCTTCTATAGCTATGTCAAGCCCATAATTCCTGTCACAAATTTCTCCTTCGAAGAATGTATTGTGGGCATGAGATTGTACAAG
AGAATGAGATCACAAGTTCATAGGATAGAGAAGCATCCAATGGCTTCTGACCCACAAAACAAAAATAACTTTGCTATTTGGAGGGAAAATGAGCTTCAAAGGATGAGTCC
AGAACAAATGTTGGAGATTTCTAGGTCTGATTATTATTGTTGGTGCATGGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACCCACTTGTGCTATTTGCAAGAAACATTGTCGATCTCTTGATTCTCTTAGAGAACATCTCATTGGGACTTCTTGCTCGTTTCGCCAACTTGGGAATTCGTGACGG
TTCGACCGTCATCGATAATGGAAGAACTCGAGGCTCGGGCGCCGTGGCGTTAGCTTGCAAATATGTAGGTGGGGGCAGTGATGGGTCGCTGGACATATGTGCCAAGATTT
GCCTTATTGATGAGAGCGAAAATGTCATCTTCTATAGCTATGTCAAGCCCATAATTCCTGTCACAAATTTCTCCTTCGAAGAATGTATTGTGGGCATGAGATTGTACAAG
AGAATGAGATCACAAGTTCATAGGATAGAGAAGCATCCAATGGCTTCTGACCCACAAAACAAAAATAACTTTGCTATTTGGAGGGAAAATGAGCTTCAAAGGATGAGTCC
AGAACAAATGTTGGAGATTTCTAGGTCTGATTATTATTGTTGGTGCATGGATTAA
Protein sequenceShow/hide protein sequence
MNPLVLFARNIVDLLILLENISLGLLARFANLGIRDGSTVIDNGRTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNFSFEECIVGMRLYK
RMRSQVHRIEKHPMASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD