CuGenDBv2

Gene ID	HG10022247
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	photosynthetic NDH subunit of lumenal location 1, chloroplastic
Genome location	Chr05:22293474..22295775
RNA-Seq Expression	HG10022247
Synteny	HG10022247
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009507 - chloroplast (cellular component) GO:0009654 - photosystem II oxygen evolving complex (cellular component) GO:0019898 - extrinsic component of membrane (cellular component) GO:0005509 - calcium ion binding (molecular function)
InterPro domains	IPR002683 - PsbP, C-terminal IPR016123 - Mog1/PsbP, alpha/beta/alpha sandwich

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022953447.1 photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucurbita moschata]

7.9e-36

43.64

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Query:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------
        MAVSTSCLSWVPT+ASNWK RLLPFNEPSTATCS+SSC+TI CSTERTSR E HCNRRPLLLGVGALA SL  ASPLFAE                    
Subjt:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
          GRYYTL+VGANDRRWRRYRDMLKVVADSFRVLDI
Subjt:  --GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI

XP_022953456.1 photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 [Cucurbita moschata]

6.1e-36

43.83

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Query:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------
        MAVSTSCLSWVPT+ASNWK RLLPFNEPSTATCS+SSC+TI CSTERTSR E HCNRRPLLLGVGALA SL  ASPLFAE                    
Subjt:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
         GRYYTL+VGANDRRWRRYRDMLKVVADSFRVLDI
Subjt:  -GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI

XP_023534754.1 photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]

3.9e-35

42.98

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Query:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------
        MAVSTSCLSWVPT+ASNWK RLLPFNEPSTATCS+SSC+T+ CSTERTSR E  CNRRPLLLGVGALATSL  A+PLFAE                    
Subjt:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
         GRYYTL+VGANDRRWRRYRDMLKVVADSFRVLDI
Subjt:  -GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI

XP_038889544.1 photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Benincasa hispida]

1.5e-39

46.61

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Query:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------
        MAVSTSC SWVPTTASNWKLRLLPFNEPSTAT SFSSCSTINCSTE+TSREEGHCNRRPLLLGVGALATSLL ASPLFAE                    
Subjt:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
          GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
Subjt:  --GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI

XP_038889545.1 photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 [Benincasa hispida]

1.2e-39

46.81

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Query:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------
        MAVSTSC SWVPTTASNWKLRLLPFNEPSTAT SFSSCSTINCSTE+TSREEGHCNRRPLLLGVGALATSLL ASPLFAE                    
Subjt:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
         GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
Subjt:  -GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CJF3 photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2

9.4e-35

44.26

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Query:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------
        MAVSTSCLSWVPTTASNWKL+LLPFNEP+TAT SFSS STINCS ERTSR+EG  NRRPLLLGVGALATSLL ASPLFA+                    
Subjt:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
         GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
Subjt:  -GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI

A0A6J1GN22 photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2

2.9e-36

43.83

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Query:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------
        MAVSTSCLSWVPT+ASNWK RLLPFNEPSTATCS+SSC+TI CSTERTSR E HCNRRPLLLGVGALA SL  ASPLFAE                    
Subjt:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
         GRYYTL+VGANDRRWRRYRDMLKVVADSFRVLDI
Subjt:  -GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI

A0A6J1GN93 photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1

3.8e-36

43.64

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Query:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------
        MAVSTSCLSWVPT+ASNWK RLLPFNEPSTATCS+SSC+TI CSTERTSR E HCNRRPLLLGVGALA SL  ASPLFAE                    
Subjt:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
          GRYYTL+VGANDRRWRRYRDMLKVVADSFRVLDI
Subjt:  --GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI

A0A6J1JMZ7 photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2

3.2e-35

42.98

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Query:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------
        MAVSTSCLSWVPT+ASNWK RLLPFNEPSTATCS+SSC+T+ CSTERTSR E  CNRRPLLLGVGALATSL  A PLFAE                    
Subjt:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
         GRYYTL+VGANDRRWRRYRDMLKVVADSFRVLDI
Subjt:  -GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI

A0A6J1JS28 photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1

4.2e-35

42.8

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Query:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------
        MAVSTSCLSWVPT+ASNWK RLLPFNEPSTATCS+SSC+T+ CSTERTSR E  CNRRPLLLGVGALATSL  A PLFAE                    
Subjt:  MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAE--------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
          GRYYTL+VGANDRRWRRYRDMLKVVADSFRVLDI
Subjt:  --GRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI

SwissProt top hits

e value

%identity

Alignment

O80634 Photosynthetic NDH subunit of lumenal location 1, chloroplastic

4.0e-06

53.66

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Query:  ASPLFAEGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
        A+      RYYTL+VGAN+RRWR+ +  L+VVADS ++L I
Subjt:  ASPLFAEGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI

Arabidopsis top hits

e value

%identity

Alignment

AT2G39470.1 PsbP-like protein 2

2.8e-07

53.66

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Query:  ASPLFAEGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
        A+      RYYTL+VGAN+RRWR+ +  L+VVADS ++L I
Subjt:  ASPLFAEGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI

AT2G39470.2 PsbP-like protein 2

2.8e-07

53.66

Show/hide

Query:  ASPLFAEGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
        A+      RYYTL+VGAN+RRWR+ +  L+VVADS ++L I
Subjt:  ASPLFAEGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI

AT3G55330.1 PsbP-like protein 1

1.3e-04

51.61

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Query:  GRYYTLVVGANDRRWRRYRDMLKVVADSFRV
        G +YTL  GAN+RRW + +D L  V DSF++
Subjt:  GRYYTLVVGANDRRWRRYRDMLKVVADSFRV

Sequences

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CDS sequence

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ATGGCAGTTTCAACCTCTTGCTTGAGTTGGGTTCCCACCACCGCCTCCAATTGGAAGCTGAGGTTGCTTCCTTTCAATGAGCCTTCAACAGCTACTTGTTCATTTTCTTC
CTGTAGTACCATCAATTGCTCAACTGAGAGAACTTCCCGTGAGGAAGGCCATTGCAATAGAAGGCCGCTTCTGTTGGGAGTTGGAGCTCTAGCTACAAGTTTACTCACTG
CAAGTCCCCTCTTTGCTGAAGGTAGGTACTATACTTTGGTAGTGGGGGCAAATGACAGAAGGTGGAGAAGGTACCGCGACATGCTTAAAGTGGTTGCTGATTCATTCAGG
GTGTTGGATATCTGA

mRNA sequence

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Protein sequence

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MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAEGRYYTLVVGANDRRWRRYRDMLKVVADSFR
VLDI

HG10022247 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome