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HG10022294 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10022294
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRRM domain-containing protein
Genome locationChr05:22767402..22767917
RNA-Seq ExpressionHG10022294
SyntenyHG10022294
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040563.1 glutamic acid-rich protein-like [Cucumis melo var. makuwa]2.4e-6882.74Show/hide
Query:  MLDSRSLHCRFITIWPSVQHSCHYNSPNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEE------DEDEI
        MLDS  LHCRF TI P +QHSCHYNS NSTKFRPPH  LSL+ GSGPMGFPVFAMKR GKGGI LT+ SDSDI+FDEFFDEDED+FQ+E      DEDEI
Subjt:  MLDSRSLHCRFITIWPSVQHSCHYNSPNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEE------DEDEI

Query:  LLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIA
        LLPLKNTREWHAARPRGFGEGK YDTSIEDKLLQEMEQ REAQA NINKLKNQSSS+PNSSRNVV+IA
Subjt:  LLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIA

KAE8648511.1 hypothetical protein Csa_008404 [Cucumis sativus]8.7e-6379.75Show/hide
Query:  MLDSRSLHCRFITIWPSVQHSCHYNSPNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKN
        M DS  LHC F TI P +QHSCHYNS  STKFRPPH  LSL+  SGPMGFPVFA+KR GKGGI LTE SDSDI FDEFFDE ED+FQ  DED+ILLPLKN
Subjt:  MLDSRSLHCRFITIWPSVQHSCHYNSPNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKN

Query:  TREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIAG
        T+EWHAARPRGFGEGK YDTSIED LLQEMEQ REAQA NINKLK+QSSS PNSSRNVV+IAG
Subjt:  TREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIAG

XP_008465688.1 PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo]1.2e-6782.14Show/hide
Query:  MLDSRSLHCRFITIWPSVQHSCHYNSPNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEE------DEDEI
        MLDS  LHCRF TI P +QHSCHYNS NSTKFRPPH  LSL+ GSGPMGFPVFAMKR GKGGI LT+ SDSDI+FDEFFDEDED+FQ+E      DEDEI
Subjt:  MLDSRSLHCRFITIWPSVQHSCHYNSPNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEE------DEDEI

Query:  LLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIA
        LLPLKNTREWHAARPRGFGEGK YDTSIEDKLLQEMEQ REAQA NINKLKNQ SS+PNSSRNVV+IA
Subjt:  LLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIA

XP_031741253.1 uncharacterized protein LOC101210443 [Cucumis sativus]4.3e-6279.63Show/hide
Query:  MLDSRSLHCRFITIWPSVQHSCHYNSPNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKN
        M DS  LHC F TI P +QHSCHYNS  STKFRPPH  LSL+  SGPMGFPVFA+KR GKGGI LTE SDSDI FDEFFDE ED+FQ  DED+ILLPLKN
Subjt:  MLDSRSLHCRFITIWPSVQHSCHYNSPNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKN

Query:  TREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIA
        T+EWHAARPRGFGEGK YDTSIED LLQEMEQ REAQA NINKLK+QSSS PNSSRNVV+IA
Subjt:  TREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIA

XP_038890170.1 uncharacterized protein LOC120079826 [Benincasa hispida]2.4e-7387.04Show/hide
Query:  MLDSRSLHCRFITIWPSVQHSCHYNSPNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKN
        M DS SL CRF+TIWPSVQH CHYNSPNSTKFRPPHF  SLVHGSGPMGFPVFAMKRSGKGG+ LTEQS+SDIEFD+FFDEDEDDFQ+EDEDEILLPLKN
Subjt:  MLDSRSLHCRFITIWPSVQHSCHYNSPNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKN

Query:  TREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIA
        TREWH ARPRGFGEGK YDTSIEDKLLQEMEQSREAQA NINKL NQS+SEP SSRN V+ A
Subjt:  TREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIA

TrEMBL top hitse value%identityAlignment
A0A0A0KQN3 Uncharacterized protein2.1e-6279.63Show/hide
Query:  MLDSRSLHCRFITIWPSVQHSCHYNSPNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKN
        M DS  LHC F TI P +QHSCHYNS  STKFRPPH  LSL+  SGPMGFPVFA+KR GKGGI LTE SDSDI FDEFFDE ED+FQ  DED+ILLPLKN
Subjt:  MLDSRSLHCRFITIWPSVQHSCHYNSPNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKN

Query:  TREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIA
        T+EWHAARPRGFGEGK YDTSIED LLQEMEQ REAQA NINKLK+QSSS PNSSRNVV+IA
Subjt:  TREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIA

A0A0A0KS07 Uncharacterized protein1.6e-6279.14Show/hide
Query:  MLDSRSLHCRFITIWPSVQHSCHYNSPNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKN
        M DS  LHC F TI P +QHSCHYNS  STKFRPPH  LSL+  SGPMGFPVFA+KR GKGGI LTE SDSDI FDEFFDE ED+FQ  DED+ILLPLKN
Subjt:  MLDSRSLHCRFITIWPSVQHSCHYNSPNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKN

Query:  TREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIAG
        T+EWHAARPRGFGEGK YDTSIED LLQEMEQ REAQA NINKLK+QS S PNSSRNVV+IAG
Subjt:  TREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIAG

A0A1S3CPG6 uncharacterized protein LOC1035033175.7e-6882.14Show/hide
Query:  MLDSRSLHCRFITIWPSVQHSCHYNSPNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEE------DEDEI
        MLDS  LHCRF TI P +QHSCHYNS NSTKFRPPH  LSL+ GSGPMGFPVFAMKR GKGGI LT+ SDSDI+FDEFFDEDED+FQ+E      DEDEI
Subjt:  MLDSRSLHCRFITIWPSVQHSCHYNSPNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEE------DEDEI

Query:  LLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIA
        LLPLKNTREWHAARPRGFGEGK YDTSIEDKLLQEMEQ REAQA NINKLKNQ SS+PNSSRNVV+IA
Subjt:  LLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIA

A0A5D3C5E5 Glutamic acid-rich protein-like1.1e-6882.74Show/hide
Query:  MLDSRSLHCRFITIWPSVQHSCHYNSPNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEE------DEDEI
        MLDS  LHCRF TI P +QHSCHYNS NSTKFRPPH  LSL+ GSGPMGFPVFAMKR GKGGI LT+ SDSDI+FDEFFDEDED+FQ+E      DEDEI
Subjt:  MLDSRSLHCRFITIWPSVQHSCHYNSPNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEE------DEDEI

Query:  LLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIA
        LLPLKNTREWHAARPRGFGEGK YDTSIEDKLLQEMEQ REAQA NINKLKNQSSS+PNSSRNVV+IA
Subjt:  LLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIA

A0A6J1KJD4 uncharacterized protein LOC1114937285.0e-4866.47Show/hide
Query:  MLDSRSLHCRFITIWPSVQHSCHYNS--------------PNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDF
        MLDS  LHCRFIT WPS  HS   NS              PNSTKFR  HF LSLVHG  PM FPVF++K+ GKGG+ LT QSDSDIEFD   DED D  
Subjt:  MLDSRSLHCRFITIWPSVQHSCHYNS--------------PNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDF

Query:  QEEDEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVV
             DE+LLPL N REW AARPRGFGEGKEYDTSIE+KLLQE+EQSR+AQA NINKLK+Q  S PNSSRNVV
Subjt:  QEEDEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G70200.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.5e-1544.35Show/hide
Query:  GFPVFAMKRSGKGGIGLTEQSDSDIEFD----EFFDEDEDDFQEEDEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKL
        GF  FA+ +   G   + E  D D E D    EF  EDE + +EEDE E  LP+   ++W   +PRGFG GK+Y+T IEDKLL E+EQS +AQA N+NKL
Subjt:  GFPVFAMKRSGKGGIGLTEQSDSDIEFD----EFFDEDEDDFQEEDEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKL

Query:  KNQ--SSSEPNSSRNVVQIAGQSQ
        KN    S +     N+++  G++Q
Subjt:  KNQ--SSSEPNSSRNVVQIAGQSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGATTCCCGGTCTCTTCACTGCCGTTTCATCACGATTTGGCCGTCAGTGCAACACAGTTGCCATTACAACTCTCCCAATTCGACAAAATTCCGGCCACCCCATTT
CCGTTTGTCTCTTGTCCATGGCTCAGGACCAATGGGGTTTCCTGTTTTTGCCATGAAGAGGTCTGGGAAAGGCGGCATTGGCCTCACTGAGCAGAGTGATTCCGACATTG
AGTTCGATGAATTTTTCGATGAGGATGAGGATGATTTTCAGGAGGAGGATGAGGATGAGATTCTTTTGCCGTTAAAGAATACGAGAGAGTGGCATGCGGCGAGGCCTCGT
GGATTTGGAGAAGGGAAGGAGTATGACACCTCAATTGAAGACAAATTGCTACAAGAAATGGAGCAGAGTAGGGAAGCTCAGGCTACAAATATCAATAAGCTCAAGAATCA
GTCTTCTTCTGAGCCCAACTCTAGTAGAAATGTCGTACAGATAGCAGGCCAGTCTCAATCTCTCTCAGTTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCGATTCCCGGTCTCTTCACTGCCGTTTCATCACGATTTGGCCGTCAGTGCAACACAGTTGCCATTACAACTCTCCCAATTCGACAAAATTCCGGCCACCCCATTT
CCGTTTGTCTCTTGTCCATGGCTCAGGACCAATGGGGTTTCCTGTTTTTGCCATGAAGAGGTCTGGGAAAGGCGGCATTGGCCTCACTGAGCAGAGTGATTCCGACATTG
AGTTCGATGAATTTTTCGATGAGGATGAGGATGATTTTCAGGAGGAGGATGAGGATGAGATTCTTTTGCCGTTAAAGAATACGAGAGAGTGGCATGCGGCGAGGCCTCGT
GGATTTGGAGAAGGGAAGGAGTATGACACCTCAATTGAAGACAAATTGCTACAAGAAATGGAGCAGAGTAGGGAAGCTCAGGCTACAAATATCAATAAGCTCAAGAATCA
GTCTTCTTCTGAGCCCAACTCTAGTAGAAATGTCGTACAGATAGCAGGCCAGTCTCAATCTCTCTCAGTTTTTTAG
Protein sequenceShow/hide protein sequence
MLDSRSLHCRFITIWPSVQHSCHYNSPNSTKFRPPHFRLSLVHGSGPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKNTREWHAARPR
GFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIAGQSQSLSVF