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HG10022308 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10022308
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPaired amphipathic helix protein Sin3-like 3 isoform X3
Genome locationChr05:22913479..22914024
RNA-Seq ExpressionHG10022308
SyntenyHG10022308
Gene Ontology termsGO:0045892 - negative regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003714 - transcription corepressor activity (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040504.1 paired amphipathic helix protein Sin3-like 4 isoform X1 [Cucumis melo var. makuwa]4.3e-2789.04Show/hide
Query:  MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHDAHPTT
        M GLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEV+RAVTTSQGLQ+EAQ E  DINDG RAHDAHP T
Subjt:  MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHDAHPTT

KAF2302447.1 hypothetical protein GH714_036385 [Hevea brasiliensis]6.7e-0443.28Show/hide
Query:  EGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHD
        EG +V NGLECKI CNSSKIQK  CF  K + ++    + A+T     ++  + E     DGY AH+
Subjt:  EGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHD

RDY08279.1 DExH-box ATP-dependent RNA helicase DExH15 chloroplastic, partial [Mucuna pruriens]1.4e-0642.03Show/hide
Query:  MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHDA
        MEG++++NGLECKI C+SSKI KT CF ++ +EE C+  ++A+     LQ  AQ +  D    +  H++
Subjt:  MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHDA

TKY69771.1 Paired amphipathic helix protein Sin3 4 [Spatholobus suberectus]7.1e-0642.03Show/hide
Query:  MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHDA
        MEGL+++NGLECKI C+SSKI KT CF ++ +E+ C+  +  +     LQ   Q E TD  + +  H++
Subjt:  MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHDA

TYK23458.1 paired amphipathic helix protein Sin3-like 3 isoform X3 [Cucumis melo var. makuwa]4.3e-2789.04Show/hide
Query:  MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHDAHPTT
        M GLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEV+RAVTTSQGLQ+EAQ E  DINDG RAHDAHP T
Subjt:  MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHDAHPTT

TrEMBL top hitse value%identityAlignment
A0A371HZS5 DExH-box ATP-dependent RNA helicase DExH15 chloroplastic (Fragment)7.0e-0742.03Show/hide
Query:  MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHDA
        MEG++++NGLECKI C+SSKI KT CF ++ +EE C+  ++A+     LQ  AQ +  D    +  H++
Subjt:  MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHDA

A0A5A7TAL0 Paired amphipathic helix protein Sin3-like 4 isoform X12.1e-2789.04Show/hide
Query:  MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHDAHPTT
        M GLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEV+RAVTTSQGLQ+EAQ E  DINDG RAHDAHP T
Subjt:  MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHDAHPTT

A0A5D3DJ15 Paired amphipathic helix protein Sin3-like 3 isoform X32.1e-2789.04Show/hide
Query:  MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHDAHPTT
        M GLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEV+RAVTTSQGLQ+EAQ E  DINDG RAHDAHP T
Subjt:  MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHDAHPTT

A0A6N2K0R3 HDAC_interact domain-containing protein2.5e-0453.19Show/hide
Query:  MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQ
        MEG +V+NGLECKI CNSSK QK  C   K + ++C  +  A TT Q
Subjt:  MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQ

A0A803PD15 Uncharacterized protein2.2e-0551.47Show/hide
Query:  MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHD
        MEGL+V NGLECKI C SSK  KT C  QK + ++CI+++ A T   GLQM  QVE       + AHD
Subjt:  MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGACTTAAGGTTGTCAATGGTCTGGAGTGTAAAATCACATGCAATTCATCAAAGATACAGAAGACTATTTGTTTCGCACAAAAGGCAGAAGAAGAAGTTTGCAT
AGAGGTGATTCGTGCCGTCACCACCAGTCAAGGTCTTCAAATGGAAGCTCAAGTAGAGGTCACCGATATCAACGATGGCTATCGAGCTCATGATGCACATCCCACTACCT
GA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGACTTAAGGTTGTCAATGGTCTGGAGTGTAAAATCACATGCAATTCATCAAAGATACAGAAGACTATTTGTTTCGCACAAAAGGCAGAAGAAGAAGTTTGCAT
AGAGGTGATTCGTGCCGTCACCACCAGTCAAGGTCTTCAAATGGAAGCTCAAGTAGAGGTCACCGATATCAACGATGGCTATCGAGCTCATGATGCACATCCCACTACCT
GA
Protein sequenceShow/hide protein sequence
MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHDAHPTT