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HG10022403 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10022403
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPectinesterase
Genome locationChr05:23927469..23935019
RNA-Seq ExpressionHG10022403
SyntenyHG10022403
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0016788 - hydrolase activity, acting on ester bonds (molecular function)
InterPro domainsIPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055635.1 pectinesterase QRT1 [Cucumis melo var. makuwa]6.6e-3367.42Show/hide
Query:  MMKRFLCFLCNNN-------GFFP-LITILGFFLLGVV-GESSGGGAGGGGGAGAEESYGMISWDDLRVDDWRRQGISSGEGL-ENGTRIIVVDKNCSGD
        MM+ FLCFLCNNN       GFFP +I +L F LL VV GESSG G GG          G+ISWDDLRVD W RQ +SSGEGL  NGTRIIVVDKN SGD
Subjt:  MMKRFLCFLCNNN-------GFFP-LITILGFFLLGVV-GESSGGGAGGGGGAGAEESYGMISWDDLRVDDWRRQGISSGEGL-ENGTRIIVVDKNCSGD

Query:  STTVQGAGDRFPHNNKQRVKIYILPGIYRALI
        STTVQGA D  PHNNKQRVKIYILPGIYR ++
Subjt:  STTVQGAGDRFPHNNKQRVKIYILPGIYRALI

XP_004150299.1 pectinesterase QRT1 [Cucumis sativus]1.1e-3272.48Show/hide
Query:  NNNGFFPLITILGFFLLGVVGESSGGGAGGGGGAGAEESYGMISWDDLRVDDWRRQGISSGEGLENGTRIIVVDKNCSGDSTTVQGAGDRFPHNNKQRVK
        NN GFFP I +LGF LL V G SSG G G           G+ISWDDLRVD WRRQ +SS EGL NGTRIIVVDKNCSGDSTTVQGA D  PHNNKQRVK
Subjt:  NNNGFFPLITILGFFLLGVVGESSGGGAGGGGGAGAEESYGMISWDDLRVDDWRRQGISSGEGLENGTRIIVVDKNCSGDSTTVQGAGDRFPHNNKQRVK

Query:  IYILPGIYR
        IYILPGIYR
Subjt:  IYILPGIYR

XP_008463039.1 PREDICTED: pectinesterase QRT1 [Cucumis melo]1.7e-3369.53Show/hide
Query:  MKRFLCFLCNNN-------GFFP-LITILGFFLLGVV-GESSGGGAGGGGGAGAEESYGMISWDDLRVDDWRRQGISSGEGL-ENGTRIIVVDKNCSGDS
        M+ FLCFLCNNN       GFFP +I +L F LL VV GESSG G GG          G+ISWDDLRVD W RQ +SSGEGL  NGTRIIVVDKNCSGDS
Subjt:  MKRFLCFLCNNN-------GFFP-LITILGFFLLGVV-GESSGGGAGGGGGAGAEESYGMISWDDLRVDDWRRQGISSGEGL-ENGTRIIVVDKNCSGDS

Query:  TTVQGAGDRFPHNNKQRVKIYILPGIYR
        TTVQGA D  PHNNKQRVKIYILPGIYR
Subjt:  TTVQGAGDRFPHNNKQRVKIYILPGIYR

XP_022975722.1 pectinesterase QRT1 [Cucurbita maxima]3.7e-2052.67Show/hide
Query:  PLITILGFFLLGVVGESSGGGAGGGG----GAGAEESYGMISWDDLRVDDWRRQGISS---GEGLEN--GTRIIVVDKNCSGDSTTVQGAGDRFPHNNKQ
        PL+ +L   L G+ G++SGGGA         AG  E Y  ISWDDLRVD   RQG+SS   G G++N  GTRIIVVD++ SGDSTTVQGA D  PHNN Q
Subjt:  PLITILGFFLLGVVGESSGGGAGGGG----GAGAEESYGMISWDDLRVDDWRRQGISS---GEGLEN--GTRIIVVDKNCSGDSTTVQGAGDRFPHNNKQ

Query:  RVKIYILPGIYRALISQTLLRSPTSMLREGK
        RVKIYI PGIYR  +   + +   S++   K
Subjt:  RVKIYILPGIYRALISQTLLRSPTSMLREGK

XP_038896509.1 pectinesterase QRT1 [Benincasa hispida]7.8e-4281.82Show/hide
Query:  MKRFLCFLCNNN-GFFPLITILGFFLLGVVGES--SGGGAGGGGGAGAEESYGMISWDDLRVDDWRRQGISSGEGLENGTRIIVVDKNCSGDSTTVQGAG
        MKRFLCFLCNNN GFFPLI IL F LL V GES  S GGAGGGGG   E SYGMISWDDLRVD  RRQGISSG  L NGTRIIVVDKNCSG+STTVQGA 
Subjt:  MKRFLCFLCNNN-GFFPLITILGFFLLGVVGES--SGGGAGGGGGAGAEESYGMISWDDLRVDDWRRQGISSGEGLENGTRIIVVDKNCSGDSTTVQGAG

Query:  DRFPHNNKQRVKIYILPGIYR
        D  PHNNKQRVKIYILPGIYR
Subjt:  DRFPHNNKQRVKIYILPGIYR

TrEMBL top hitse value%identityAlignment
A0A0A0K706 Pectinesterase4.0e-3671.07Show/hide
Query:  MKRFLCFLC---NNNGFFPLITILGFFLLGVVGESSGGGAGGGGGAGAEESYGMISWDDLRVDDWRRQGISSGEGLENGTRIIVVDKNCSGDSTTVQGAG
        M+ FLCFLC   NN GFFP I +LGF LL V G SSG G G           G+ISWDDLRVD WRRQ +SS EGL NGTRIIVVDKNCSGDSTTVQGA 
Subjt:  MKRFLCFLC---NNNGFFPLITILGFFLLGVVGESSGGGAGGGGGAGAEESYGMISWDDLRVDDWRRQGISSGEGLENGTRIIVVDKNCSGDSTTVQGAG

Query:  DRFPHNNKQRVKIYILPGIYR
        D  PHNNKQRVKIYILPGIYR
Subjt:  DRFPHNNKQRVKIYILPGIYR

A0A1S3CIB1 Pectinesterase8.4e-3469.53Show/hide
Query:  MKRFLCFLCNNN-------GFFP-LITILGFFLLGVV-GESSGGGAGGGGGAGAEESYGMISWDDLRVDDWRRQGISSGEGL-ENGTRIIVVDKNCSGDS
        M+ FLCFLCNNN       GFFP +I +L F LL VV GESSG G GG          G+ISWDDLRVD W RQ +SSGEGL  NGTRIIVVDKNCSGDS
Subjt:  MKRFLCFLCNNN-------GFFP-LITILGFFLLGVV-GESSGGGAGGGGGAGAEESYGMISWDDLRVDDWRRQGISSGEGL-ENGTRIIVVDKNCSGDS

Query:  TTVQGAGDRFPHNNKQRVKIYILPGIYR
        TTVQGA D  PHNNKQRVKIYILPGIYR
Subjt:  TTVQGAGDRFPHNNKQRVKIYILPGIYR

A0A5D3BZ21 Pectinesterase QRT13.2e-3367.42Show/hide
Query:  MMKRFLCFLCNNN-------GFFP-LITILGFFLLGVV-GESSGGGAGGGGGAGAEESYGMISWDDLRVDDWRRQGISSGEGL-ENGTRIIVVDKNCSGD
        MM+ FLCFLCNNN       GFFP +I +L F LL VV GESSG G GG          G+ISWDDLRVD W RQ +SSGEGL  NGTRIIVVDKN SGD
Subjt:  MMKRFLCFLCNNN-------GFFP-LITILGFFLLGVV-GESSGGGAGGGGGAGAEESYGMISWDDLRVDDWRRQGISSGEGL-ENGTRIIVVDKNCSGD

Query:  STTVQGAGDRFPHNNKQRVKIYILPGIYRALI
        STTVQGA D  PHNNKQRVKIYILPGIYR ++
Subjt:  STTVQGAGDRFPHNNKQRVKIYILPGIYRALI

A0A6J1CG92 Pectinesterase8.4e-1865.48Show/hide
Query:  GGGGAGAEESYGMISWDDLRVDDWRRQGISSGEGLENGTRIIVVDKNCSGDSTTVQGAGDRFPHNNKQRVKIYILPGIYRALIS
        G  G G  E Y  I WDDL +D  RRQG++SG+    GTRIIVVDKNCSGDS TVQGA D  PH NKQRVKIYILPGIYR  ++
Subjt:  GGGGAGAEESYGMISWDDLRVDDWRRQGISSGEGLENGTRIIVVDKNCSGDSTTVQGAGDRFPHNNKQRVKIYILPGIYRALIS

A0A6J1IDU4 Pectinesterase1.8e-2052.67Show/hide
Query:  PLITILGFFLLGVVGESSGGGAGGGG----GAGAEESYGMISWDDLRVDDWRRQGISS---GEGLEN--GTRIIVVDKNCSGDSTTVQGAGDRFPHNNKQ
        PL+ +L   L G+ G++SGGGA         AG  E Y  ISWDDLRVD   RQG+SS   G G++N  GTRIIVVD++ SGDSTTVQGA D  PHNN Q
Subjt:  PLITILGFFLLGVVGESSGGGAGGGG----GAGAEESYGMISWDDLRVDDWRRQGISS---GEGLEN--GTRIIVVDKNCSGDSTTVQGAGDRFPHNNKQ

Query:  RVKIYILPGIYRALISQTLLRSPTSMLREGK
        RVKIYI PGIYR  +   + +   S++   K
Subjt:  RVKIYILPGIYRALISQTLLRSPTSMLREGK

SwissProt top hitse value%identityAlignment
Q9FM79 Pectinesterase QRT11.3e-1038.33Show/hide
Query:  FFPLITILGFFLLGVVGESSGGGAGGGGGAGAEESYGMISWDDLRV---------------DDWRRQGISSGEGLENGTRIIVVDKNCSGDSTTVQGAGD
        F P + +L F ++  +  S     G        E    ISW+DLRV                +W     ++     N  R+IVVDKN  GDS TVQGA D
Subjt:  FFPLITILGFFLLGVVGESSGGGAGGGGGAGAEESYGMISWDDLRV---------------DDWRRQGISSGEGLENGTRIIVVDKNCSGDSTTVQGAGD

Query:  RFPHNNKQRVKIYILPGIYR
          P +N QRVKI+ILPGIYR
Subjt:  RFPHNNKQRVKIYILPGIYR

Arabidopsis top hitse value%identityAlignment
AT5G07420.1 Pectin lyase-like superfamily protein6.8e-0434.92Show/hide
Query:  EGLENGTRIIVVDKNCSGDSTTVQGAGDRFPHNNKQRVKIYILPGIYRALISQTLLRSPTSML
        E  E   R+I+V++N  GD  T+  A    P  NK RV I + PGIY   ++  + R   ++L
Subjt:  EGLENGTRIIVVDKNCSGDSTTVQGAGDRFPHNNKQRVKIYILPGIYRALISQTLLRSPTSML

AT5G55590.1 Pectin lyase-like superfamily protein8.9e-1238.33Show/hide
Query:  FFPLITILGFFLLGVVGESSGGGAGGGGGAGAEESYGMISWDDLRV---------------DDWRRQGISSGEGLENGTRIIVVDKNCSGDSTTVQGAGD
        F P + +L F ++  +  S     G        E    ISW+DLRV                +W     ++     N  R+IVVDKN  GDS TVQGA D
Subjt:  FFPLITILGFFLLGVVGESSGGGAGGGGGAGAEESYGMISWDDLRV---------------DDWRRQGISSGEGLENGTRIIVVDKNCSGDSTTVQGAGD

Query:  RFPHNNKQRVKIYILPGIYR
          P +N QRVKI+ILPGIYR
Subjt:  RFPHNNKQRVKIYILPGIYR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAGAGGTTCTTGTGTTTCCTATGTAATAATAATGGGTTTTTCCCTCTCATTACCATTCTTGGTTTTTTTCTCTTGGGTGTCGTCGGAGAGAGCTCCGGC
GGCGGCGCTGGTGGTGGTGGTGGTGCAGGAGCAGAGGAATCATATGGTATGATCAGTTGGGATGATTTGCGTGTGGATGATTGGCGGCGGCAGGGGATCAGCTCC
GGCGAGGGGTTGGAGAATGGGACTAGAATAATTGTGGTGGATAAGAACTGCTCCGGCGACTCCACGACGGTGCAAGGGGCGGGGGATAGGTTCCCTCATAATAAC
AAACAGAGAGTTAAGATTTATATTCTTCCTGGCATTTACAGGGCTTTAATTTCCCAAACTTTGTTAAGGTCGCCCACATCCATGCTAAGAGAGGGAAAATTCGGG
ATCCCCCAAGCGATTAAGGTCACGAAACTTCAGAAATCAGATTCTCCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGAAGAGGTTCTTGTGTTTCCTATGTAATAATAATGGGTTTTTCCCTCTCATTACCATTCTTGGTTTTTTTCTCTTGGGTGTCGTCGGAGAGAGCTCCGGC
GGCGGCGCTGGTGGTGGTGGTGGTGCAGGAGCAGAGGAATCATATGGTATGATCAGTTGGGATGATTTGCGTGTGGATGATTGGCGGCGGCAGGGGATCAGCTCC
GGCGAGGGGTTGGAGAATGGGACTAGAATAATTGTGGTGGATAAGAACTGCTCCGGCGACTCCACGACGGTGCAAGGGGCGGGGGATAGGTTCCCTCATAATAAC
AAACAGAGAGTTAAGATTTATATTCTTCCTGGCATTTACAGGGCTTTAATTTCCCAAACTTTGTTAAGGTCGCCCACATCCATGCTAAGAGAGGGAAAATTCGGG
ATCCCCCAAGCGATTAAGGTCACGAAACTTCAGAAATCAGATTCTCCGTGA
Protein sequenceShow/hide protein sequence
MMKRFLCFLCNNNGFFPLITILGFFLLGVVGESSGGGAGGGGGAGAEESYGMISWDDLRVDDWRRQGISSGEGLENGTRIIVVDKNCSGDSTTVQGAGDRFPHNN
KQRVKIYILPGIYRALISQTLLRSPTSMLREGKFGIPQAIKVTKLQKSDSP