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HG10022477 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10022477
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationChr05:24711419..24716377
RNA-Seq ExpressionHG10022477
SyntenyHG10022477
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0097525 - spliceosomal snRNP complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027078 - Small nuclear ribonucleoprotein E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5394187.1 hypothetical protein IGI04_024150 [Brassica rapa subsp. trilocularis]2.4e-1085.37Show/hide
Query:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNVKKKSRKTLG
        MASTKVQRIMTQPIGFDEYMNLVLD+AEEV++KK +RK LG
Subjt:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNVKKKSRKTLG
KAG7035720.1 putative small nuclear ribonucleoprotein E [Cucurbita argyrosperma subsp. argyrosperma]1.2e-1295.12Show/hide
Query:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNVKKKSRKTLG
        MASTKVQRIMTQPIGFDEYMNLVLDDAEEVN+KKKS+KTLG
Subjt:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNVKKKSRKTLG
KHN31189.1 Small nuclear ribonucleoprotein E [Glycine soja]5.2e-1397.56Show/hide
Query:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNVKKKSRKTLG
        MASTKVQR+MTQPIGFDEYMNLVLDDAEEVNVKKKSRKTLG
Subjt:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNVKKKSRKTLG
TQE13957.1 hypothetical protein C1H46_000379 [Malus baccata]1.4e-1085.37Show/hide
Query:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNVKKKSRKTLG
        MAS KVQRIMTQPIGFDEYMNLVLD+AEEV++KKK+RK+LG
Subjt:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNVKKKSRKTLG
VVA99526.1 unnamed protein product [Arabis nemorensis]2.4e-1085.37Show/hide
Query:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNVKKKSRKTLG
        MASTKVQRIMTQPIGFDEYMNLVLD+AEEV++KK +RK LG
Subjt:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNVKKKSRKTLG
TrEMBL top hitse value%identityAlignment
A0A0K9QUA8 Small nuclear ribonucleoprotein E6.4e-0962.9Show/hide
Query:  MASTKVQRIMTQP---------------------IGFDEYMNLVLDDAEEVNVKKKSRKTLG
        MASTKVQRIMTQP                     IGFDEYMNLVLDDAEEVNVKKK+RK+LG
Subjt:  MASTKVQRIMTQP---------------------IGFDEYMNLVLDDAEEVNVKKKSRKTLG
A0A3N6QX92 Sm protein E1.2e-1085.37Show/hide
Query:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNVKKKSRKTLG
        MASTKVQRIMTQPIGFDEYMNLVLD+AEEV++KK +RK LG
Subjt:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNVKKKSRKTLG
A0A540NSG8 Sm protein E6.9e-1185.37Show/hide
Query:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNVKKKSRKTLG
        MAS KVQRIMTQPIGFDEYMNLVLD+AEEV++KKK+RK+LG
Subjt:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNVKKKSRKTLG
A0A565BF94 Sm protein E1.2e-1085.37Show/hide
Query:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNVKKKSRKTLG
        MASTKVQRIMTQPIGFDEYMNLVLD+AEEV++KK +RK LG
Subjt:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNVKKKSRKTLG
A0A803KX85 Uncharacterized protein6.4e-0962.9Show/hide
Query:  MASTKVQRIMTQP---------------------IGFDEYMNLVLDDAEEVNVKKKSRKTLG
        MASTKVQRIMTQP                     IGFDEYMNLVLDDAEEVNVKKK+RK+LG
Subjt:  MASTKVQRIMTQP---------------------IGFDEYMNLVLDDAEEVNVKKKSRKTLG
SwissProt top hitse value%identityAlignment
A4FUI2 Small nuclear ribonucleoprotein E1.1e-0582.14Show/hide
Query:  IGFDEYMNLVLDDAEEVNVKKKSRKTLG
        IGFDEYMNLVLDDAEE++ K KSRK LG
Subjt:  IGFDEYMNLVLDDAEEVNVKKKSRKTLG
P62303 Small nuclear ribonucleoprotein E1.1e-0582.14Show/hide
Query:  IGFDEYMNLVLDDAEEVNVKKKSRKTLG
        IGFDEYMNLVLDDAEE++ K KSRK LG
Subjt:  IGFDEYMNLVLDDAEEVNVKKKSRKTLG
P62304 Small nuclear ribonucleoprotein E1.1e-0582.14Show/hide
Query:  IGFDEYMNLVLDDAEEVNVKKKSRKTLG
        IGFDEYMNLVLDDAEE++ K KSRK LG
Subjt:  IGFDEYMNLVLDDAEEVNVKKKSRKTLG
P62305 Small nuclear ribonucleoprotein E1.1e-0582.14Show/hide
Query:  IGFDEYMNLVLDDAEEVNVKKKSRKTLG
        IGFDEYMNLVLDDAEE++ K KSRK LG
Subjt:  IGFDEYMNLVLDDAEEVNVKKKSRKTLG
Q7ZUG0 Small nuclear ribonucleoprotein E8.4e-0682.14Show/hide
Query:  IGFDEYMNLVLDDAEEVNVKKKSRKTLG
        IGFDEYMNLVLDDAEEV++K K+RK LG
Subjt:  IGFDEYMNLVLDDAEEVNVKKKSRKTLG
Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein1.3e-0949.3Show/hide
Query:  MASTKVQRIMTQPI------------------------------GFDEYMNLVLDDAEEVNVKKKSRKTLG
        MASTKVQRIMTQPI                              GFDEYMNLVLD+AEEV++KK +RK LG
Subjt:  MASTKVQRIMTQPI------------------------------GFDEYMNLVLDDAEEVNVKKKSRKTLG
AT2G18740.2 Small nuclear ribonucleoprotein family protein1.3e-0949.3Show/hide
Query:  MASTKVQRIMTQPI------------------------------GFDEYMNLVLDDAEEVNVKKKSRKTLG
        MASTKVQRIMTQPI                              GFDEYMNLVLD+AEEV++KK +RK LG
Subjt:  MASTKVQRIMTQPI------------------------------GFDEYMNLVLDDAEEVNVKKKSRKTLG
AT4G30330.1 Small nuclear ribonucleoprotein family protein3.4e-1050.7Show/hide
Query:  MASTKVQRIMTQPI------------------------------GFDEYMNLVLDDAEEVNVKKKSRKTLG
        MASTKVQRIMTQPI                              GFDEYMNLVLD+AEEV++KKK+RK LG
Subjt:  MASTKVQRIMTQPI------------------------------GFDEYMNLVLDDAEEVNVKKKSRKTLG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAACCCATTGGCTTTGACGAATATATGAATTTGGTTTTGGATGATGCTGAGGAAGTCAACGTAAAGAAGAAGAGCAG
GAAAACTTTAGGTTTGTCTCTTCATTATTACCCTTCCGTAGCCATTACTTTCTGGAGTCTGAAGGACAGAATAAAAACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAACCCATTGGCTTTGACGAATATATGAATTTGGTTTTGGATGATGCTGAGGAAGTCAACGTAAAGAAGAAGAGCAG
GAAAACTTTAGGTTTGTCTCTTCATTATTACCCTTCCGTAGCCATTACTTTCTGGAGTCTGAAGGACAGAATAAAAACTTAG
Protein sequenceShow/hide protein sequence
MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNVKKKSRKTLGLSLHYYPSVAITFWSLKDRIKT