CuGenDBv2

Gene ID	HG10022496
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DEAD-box ATP-dependent RNA helicase 28
Genome location	Chr05:24874109..24874693
RNA-Seq Expression	HG10022496
Synteny	HG10022496
Gene Ontology terms	GO:0005730 - nucleolus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003724 - RNA helicase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6592218.1 DEAD-box ATP-dependent RNA helicase 28, partial [Cucurbita argyrosperma subsp. sororia]

5.3e-32

92.63

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Query:  GGENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYK
        GGENKK  SGLSLVKLAYRRAKAVKAV KA+DSGKIV KQNQKTKKSSHRTQSRSEEMREMFQ+DMSEQKQKRRGSGGAG KKSKHSFKSKSRYK
Subjt:  GGENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYK

KAG7025080.1 DEAD-box ATP-dependent RNA helicase 28, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.3e-32

92.63

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Query:  GGENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYK
        GGENKK  SGLSLVKLAYRRAKAVKAV KA+DSGKIV KQNQKTKKSSHRTQSRSEEMREMFQ+DMSEQKQKRRGSGGAG KKSKHSFKSKSRYK
Subjt:  GGENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYK

TYK19629.1 DEAD-box ATP-dependent RNA helicase 28 isoform X1 [Cucumis melo var. makuwa]

2.3e-35

91.09

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Query:  ENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYKLIIQPSK
        +N K   GLSL+KLAYRRAKAVKAVK+AVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGG GKKKSKHSFKSKSRYKLI QPSK
Subjt:  ENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYKLIIQPSK

Query:  L
        L
Subjt:  L

XP_023536235.1 DEAD-box ATP-dependent RNA helicase 28-like [Cucurbita pepo subsp. pepo]

5.3e-32

91.67

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Query:  GGGENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYK
        GGGENKK  SGLSLVKLAYRRAKAVKAV KA+DSGKIV KQNQKTKKSSHRTQSRSEEMREMFQ+DMSEQKQKR GSGGAG KKSKHSFKSKSRYK
Subjt:  GGGENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYK

XP_038900039.1 DEAD-box ATP-dependent RNA helicase 28 [Benincasa hispida]

4.2e-37

97.92

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Query:  GGGENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYK
        GGGENKKGNSGLSLVKLAYRRAKAVKAVK+AVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGG GKKKSKHSFKSKSRYK
Subjt:  GGGENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIW3 Uncharacterized protein

5.7e-32

91.4

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Query:  ENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYK
        +N K   GLSL+KLAYRRAKAVKAVK+AVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGG GKKKSKHSFKSKSRYK
Subjt:  ENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYK

A0A1S3CSW4 DEAD-box ATP-dependent RNA helicase 28 isoform X1

5.7e-32

91.4

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Query:  ENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYK
        +N K   GLSL+KLAYRRAKAVKAVK+AVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGG GKKKSKHSFKSKSRYK
Subjt:  ENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYK

A0A1S4E5Q7 DEAD-box ATP-dependent RNA helicase 28 isoform X2

5.7e-32

91.4

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Query:  ENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYK
        +N K   GLSL+KLAYRRAKAVKAVK+AVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGG GKKKSKHSFKSKSRYK
Subjt:  ENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYK

A0A5D3D7U1 DEAD-box ATP-dependent RNA helicase 28 isoform X1

1.1e-35

91.09

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Query:  ENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYKLIIQPSK
        +N K   GLSL+KLAYRRAKAVKAVK+AVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGG GKKKSKHSFKSKSRYKLI QPSK
Subjt:  ENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYKLIIQPSK

Query:  L
        L
Subjt:  L

A0A6J1F947 DEAD-box ATP-dependent RNA helicase 28 isoform X2

5.7e-32

92.63

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Query:  GGENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYK
        GGENKK  SGLSLVKLAYRRAKAVKAV KA+DSGKIV KQNQKTKKSSHRTQSRSEEMREMFQ DMSEQKQKRRGSGGAG KKSKHSFKSKSRYK
Subjt:  GGENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYK

SwissProt top hits

e value

%identity

Alignment

Q0INC5 DEAD-box ATP-dependent RNA helicase 28

2.1e-07

Show/hide

Query:  QGGGENKKGNSGLSLVKLAYRRAKAVKAV-KKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRR-GSGGAGKKKSKHSFKSKSRY
        +GG + KKG    SLV +AYRRAK++KA  K+   +GK   K ++K K+ S +  +R EEM+E+FQ+DMSE KQ R        +KKSK+SFKSKSRY
Subjt:  QGGGENKKGNSGLSLVKLAYRRAKAVKAV-KKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRR-GSGGAGKKKSKHSFKSKSRY

Q9ZRZ8 DEAD-box ATP-dependent RNA helicase 28

4.1e-11

50.5

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Query:  GENKK----GNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVK-KQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGK--KKSKHSFKSKSRY
        G++KK       GL+L  L Y RAKAVKA ++A+DSGK+ + K ++K  +S  R Q R EEM+++F+SDM E+KQ R G+  A K   KSK+SFKSK+RY
Subjt:  GENKK----GNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVK-KQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGK--KKSKHSFKSKSRY

Query:  K
        K
Subjt:  K

Arabidopsis top hits

e value

%identity

Alignment

AT4G16630.1 DEA(D/H)-box RNA helicase family protein

2.9e-12

50.5

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Query:  GENKK----GNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVK-KQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGK--KKSKHSFKSKSRY
        G++KK       GL+L  L Y RAKAVKA ++A+DSGK+ + K ++K  +S  R Q R EEM+++F+SDM E+KQ R G+  A K   KSK+SFKSK+RY
Subjt:  GENKK----GNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVK-KQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGK--KKSKHSFKSKSRY

Query:  K
        K
Subjt:  K

Sequences

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CDS sequence

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ATGCAGGGTGGTGGAGAAAATAAGAAAGGCAATTCTGGACTGTCACTTGTGAAACTTGCCTACCGTCGGGCAAAAGCAGTAAAGGCTGTGAAAAAGGCAGTTGACTCAGG
CAAGATCGTGAAGAAGCAAAACCAGAAAACTAAAAAGTCTTCCCACAGAACTCAATCGAGATCCGAAGAGATGCGAGAGATGTTCCAAAGCGATATGAGCGAGCAGAAGC
AGAAACGACGTGGCAGTGGCGGTGCTGGAAAGAAAAAGTCTAAACATTCCTTCAAAAGCAAGTCAAGGTACAAACTTATTATTCAACCTTCTAAGTTAAACTATCAGCTA
TTCTCTCAATATTATCATCTCAATATCGAATGTATTCTTCTAGGTTCAAGCGTAAATAGAAACTCTCATCGGAAGTCGATTGGCCTTATATTTGTTCGGGGTGGGCGCAA
CGTTAAGTTTGCAATATGCATTCCTTGCACCAGTTTTGATAGCAAATGGGGAAGAAAAATAGCTGCAGTTTTATACTCCAAAATTATGGATGTTTGTATCATCTCTTTTC
TTTTCCCCCTCAAAGTTCATTGCTCTCGGTTGTGA

mRNA sequence

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Protein sequence

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MQGGGENKKGNSGLSLVKLAYRRAKAVKAVKKAVDSGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGAGKKKSKHSFKSKSRYKLIIQPSKLNYQL
FSQYYHLNIECILLGSSVNRNSHRKSIGLIFVRGGRNVKFAICIPCTSFDSKWGRKIAAVLYSKIMDVCIISFLFPLKVHCSRL

HG10022496 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome