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HG10022547 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10022547
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr05:25368416..25368613
RNA-Seq ExpressionHG10022547
SyntenyHG10022547
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN74466.1 hypothetical protein VITISV_042969 [Vitis vinifera]2.4e-0544.83Show/hide
Query:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS
        +L+K+ LSGINI+ ++    A  L C V   PL YLG+PLG + +S SFW+ +++R+S
Subjt:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS

RVW35026.1 hypothetical protein CK203_079805 [Vitis vinifera]9.2e-0543.1Show/hide
Query:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS
        +L K+ + GIN++ N +   A FL C     P+ YLG+PLG +  ++SFW+ +IERIS
Subjt:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS

RVW80770.1 putative ribonuclease H protein [Vitis vinifera]3.2e-0544.83Show/hide
Query:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS
        +++K+ L GIN +H++I   A  L C V + PL YLG+PLG +  S SFW+ +I+R+S
Subjt:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS

RVW96880.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]7.0e-0540.35Show/hide
Query:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERI
        +L+K+ LSGINI+ N+       L C +   PL YLG+PL  + +S SFW+ +++R+
Subjt:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERI

XP_010255174.1 PREDICTED: uncharacterized protein LOC104595909 [Nelumbo nucifera]4.1e-0541.07Show/hide
Query:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIER
        +L K++L+G+N+   E+   A  L C +   P+ YLG+PLGD+    SFWN ++ER
Subjt:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIER

TrEMBL top hitse value%identityAlignment
A0A1U7ZSX8 uncharacterized protein LOC1045959092.0e-0541.07Show/hide
Query:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIER
        +L K++L+G+N+   E+   A  L C +   P+ YLG+PLGD+    SFWN ++ER
Subjt:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIER

A0A438DI46 Reverse transcriptase domain-containing protein4.4e-0543.1Show/hide
Query:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS
        +L K+ + GIN++ N +   A FL C     P+ YLG+PLG +  ++SFW+ +IERIS
Subjt:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS

A0A438H891 Putative ribonuclease H protein1.5e-0544.83Show/hide
Query:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS
        +++K+ L GIN +H++I   A  L C V + PL YLG+PLG +  S SFW+ +I+R+S
Subjt:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS

A0A438IJL2 Transposon TX1 uncharacterized 149 kDa protein3.4e-0540.35Show/hide
Query:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERI
        +L+K+ LSGINI+ N+       L C +   PL YLG+PL  + +S SFW+ +++R+
Subjt:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERI

A5BE85 Reverse transcriptase domain-containing protein1.2e-0544.83Show/hide
Query:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS
        +L+K+ LSGINI+ ++    A  L C V   PL YLG+PLG + +S SFW+ +++R+S
Subjt:  SLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGTTGATATGATATCTAGTTTAAGCAAAGCCGCTCTATCTGGCATCAATATCAACCACAATGAAATTGTTCATGAAGCTGGATTCCTTGTTTGTTTGGTTGATAG
CCTTCCCCTTGATTATCTTGGAATGCCCCTTGGAGATGATCTCAGTTCCTTCTCATTTTGGAATACAATGATAGAAAGAATCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGTTGATATGATATCTAGTTTAAGCAAAGCCGCTCTATCTGGCATCAATATCAACCACAATGAAATTGTTCATGAAGCTGGATTCCTTGTTTGTTTGGTTGATAG
CCTTCCCCTTGATTATCTTGGAATGCCCCTTGGAGATGATCTCAGTTCCTTCTCATTTTGGAATACAATGATAGAAAGAATCTCTTGA
Protein sequenceShow/hide protein sequence
MFVDMISSLSKAALSGININHNEIVHEAGFLVCLVDSLPLDYLGMPLGDDLSSFSFWNTMIERIS