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HG10022584 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10022584
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr05:25838295..25838732
RNA-Seq ExpressionHG10022584
SyntenyHG10022584
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4394884.1 hypothetical protein G4B88_002761 [Cannabis sativa]3.5e-0427.64Show/hide
Query:  GMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIVVKKIHVFFSLVPN-GIIYVEAFSLMQRLVVVSLVYTLRSYN
        G+ AV+ DD G  IV   +   GC+S K  E   +  GL+L E    S  WV  D ++++  I    S   + G +      +     ++  ++  R+ N
Subjt:  GMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIVVKKIHVFFSLVPN-GIIYVEAFSLMQRLVVVSLVYTLRSYN

Query:  RVAHNLANQAIVADSSCVWIDCI
        +VA++LA ++ +   S  W DC+
Subjt:  RVAHNLANQAIVADSSCVWIDCI

KAG2635063.1 hypothetical protein PVAP13_2NG311303 [Panicum virgatum]2.0e-0431.09Show/hide
Query:  GAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMD-VEIVVKKIHVFFSLVPNGIIYVEAFSLMQRLVVVSLVYTLRSYNRV
        GA++ D  G+AI            A   E F L  GL+L E  G +   V  D +++V       FS      +Y + F L Q   ++S+ +  R  N+V
Subjt:  GAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMD-VEIVVKKIHVFFSLVPNGIIYVEAFSLMQRLVVVSLVYTLRSYNRV

Query:  AHNLANQAIVADSSCVWID
        AH LA  + +  SSC+W D
Subjt:  AHNLANQAIVADSSCVWID

XP_019198406.1 PREDICTED: uncharacterized protein LOC109192287 [Ipomoea nil]4.6e-0425Show/hide
Query:  MGMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIVVKKIHVFFSLVPNGIIYVEAFSLMQRLVVVSLVYTLRSYN
        +G G VL DDCG+ +   ++   G  S K+ E   +   L   +        +E D ++VV+ ++    +    ++ ++   +++ L  V++ Y  R+ N
Subjt:  MGMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIVVKKIHVFFSLVPNGIIYVEAFSLMQRLVVVSLVYTLRSYN

Query:  RVAHNLANQAIVADSSCVWI
         VAHNLA +A        W+
Subjt:  RVAHNLANQAIVADSSCVWI

XP_024190675.1 uncharacterized protein LOC112194687 [Rosa chinensis]3.5e-0427.56Show/hide
Query:  GMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIVVKKIH-VFFSLVPNGIIYVEAFSLMQRLVVVSLVYTLRSYN
        G+G  L D  G     + +  P   SA   E+  +  GL+L+  H +    ++ D  +VV+ I+    +    G +  +   ++Q+L  + + YT R+ N
Subjt:  GMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIVVKKIH-VFFSLVPNGIIYVEAFSLMQRLVVVSLVYTLRSYN

Query:  RVAHNLANQAIVADSSCVWI----DCI
        ++AH LAN A  ++ +  WI    DCI
Subjt:  RVAHNLANQAIVADSSCVWI----DCI

XP_024199929.1 uncharacterized protein LOC112203151 [Rosa chinensis]4.1e-0532.23Show/hide
Query:  GMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMD-VEIVVKKIHVFFSLVPNGIIYVEAFSLMQRLVVVSLVYTLRSYN
        G+G VL  D GR +   A   P   S K GE++ +  GL L+ +       +E D  E + +      +L+ NG +  +  S M  +  V L Y  RS N
Subjt:  GMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMD-VEIVVKKIHVFFSLVPNGIIYVEAFSLMQRLVVVSLVYTLRSYN

Query:  RVAHNLANQAIVADSSCVWID
        R+AH LA     A    VW+D
Subjt:  RVAHNLANQAIVADSSCVWID

TrEMBL top hitse value%identityAlignment
A0A2I4FKP7 uncharacterized protein LOC1089997742.9e-0432.77Show/hide
Query:  GMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIVVKKI-HVFFSLVPNGIIYVEAFSLMQRLVVVSLVYTLRSYN
        G+G VL DD G+ ++  + +     +    E+  L  GL+LV   G+S   VE D  ++V+++ +   SL+ N  + +EA SL+Q    V + Y  R  N
Subjt:  GMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIVVKKI-HVFFSLVPNGIIYVEAFSLMQRLVVVSLVYTLRSYN

Query:  RVAHNLANQAIVADSSCVW
         VAH LA  A   D+  +W
Subjt:  RVAHNLANQAIVADSSCVW

A0A7J6HHY1 RNase H domain-containing protein1.7e-0427.64Show/hide
Query:  GMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIVVKKIHVFFSLVPN-GIIYVEAFSLMQRLVVVSLVYTLRSYN
        G+ AV+ DD G  IV   +   GC+S K  E   +  GL+L E    S  WV  D ++++  I    S   + G +      +     ++  ++  R+ N
Subjt:  GMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIVVKKIHVFFSLVPN-GIIYVEAFSLMQRLVVVSLVYTLRSYN

Query:  RVAHNLANQAIVADSSCVWIDCI
        +VA++LA ++ +   S  W DC+
Subjt:  RVAHNLANQAIVADSSCVWIDCI

A0A7J6I0M5 RNase H domain-containing protein6.4e-0426.83Show/hide
Query:  GMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIVVKKIHVFFSLVPN-GIIYVEAFSLMQRLVVVSLVYTLRSYN
        G+ AV+ DD G  IV   +   GC+S K  E   +  GL+L E    S  WV  D ++++  I        + G +      +     ++  ++  R+ N
Subjt:  GMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIVVKKIHVFFSLVPN-GIIYVEAFSLMQRLVVVSLVYTLRSYN

Query:  RVAHNLANQAIVADSSCVWIDCI
        +VA++LA ++ +   S  W DC+
Subjt:  RVAHNLANQAIVADSSCVWIDCI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATGGGAGCTGTTTTGCATGATGATTGTGGGAGAGCCATTGTTACCCATGCTCTTGTTTGTCCAGGTTGTGTATCGGCAAAAGATGGTGAAATTTTTGTTTTGAC
AACTGGTTTGAAGTTGGTTGAAGCTCATGGATACTCGGGATTTTGGGTGGAAATGGATGTCGAAATTGTAGTGAAAAAGATCCATGTTTTTTTTTCGTTAGTCCCTAATG
GTATTATTTATGTTGAAGCATTCTCCTTAATGCAAAGGTTGGTGGTTGTGAGCTTGGTTTATACTCTTAGAAGTTATAATAGAGTGGCCCATAATTTGGCCAATCAAGCT
ATTGTAGCTGATTCTTCTTGTGTTTGGATTGATTGTATTTTCCATGGCTCTCAAACATTGTTGGGACTAACCCTAGACCCTTACTCCTCAAAACCCTTTAAACCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGATGGGAGCTGTTTTGCATGATGATTGTGGGAGAGCCATTGTTACCCATGCTCTTGTTTGTCCAGGTTGTGTATCGGCAAAAGATGGTGAAATTTTTGTTTTGAC
AACTGGTTTGAAGTTGGTTGAAGCTCATGGATACTCGGGATTTTGGGTGGAAATGGATGTCGAAATTGTAGTGAAAAAGATCCATGTTTTTTTTTCGTTAGTCCCTAATG
GTATTATTTATGTTGAAGCATTCTCCTTAATGCAAAGGTTGGTGGTTGTGAGCTTGGTTTATACTCTTAGAAGTTATAATAGAGTGGCCCATAATTTGGCCAATCAAGCT
ATTGTAGCTGATTCTTCTTGTGTTTGGATTGATTGTATTTTCCATGGCTCTCAAACATTGTTGGGACTAACCCTAGACCCTTACTCCTCAAAACCCTTTAAACCCTAA
Protein sequenceShow/hide protein sequence
MGMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIVVKKIHVFFSLVPNGIIYVEAFSLMQRLVVVSLVYTLRSYNRVAHNLANQA
IVADSSCVWIDCIFHGSQTLLGLTLDPYSSKPFKP