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HG10022626 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10022626
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionthioredoxin-like protein 4B
Genome locationChr05:26410992..26420583
RNA-Seq ExpressionHG10022626
SyntenyHG10022626
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005682 - U5 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
InterPro domainsIPR004123 - Dim1 family
IPR036249 - Thioredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575968.1 Thioredoxin-like protein 4B, partial [Cucurbita argyrosperma subsp. sororia]2.8e-5398.13Show/hide
Query:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
        LAKCAREVSKFASIALVDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFH+KQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
Subjt:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY

Query:  QLLYKDV
        QLLYKDV
Subjt:  QLLYKDV

XP_004139666.1 thioredoxin-like protein 4B [Cucumis sativus]4.9e-5397.2Show/hide
Query:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
        LAKCAREVSKFAS+ALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKW+GAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
Subjt:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY

Query:  QLLYKDV
        QL YKDV
Subjt:  QLLYKDV

XP_022152114.1 thioredoxin-like protein 4B [Momordica charantia]8.3e-5397.2Show/hide
Query:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
        LAKCAREVSKFASIALVDIDSEEIQVY+KYFDI+LIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
Subjt:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY

Query:  QLLYKDV
        QLLYKD+
Subjt:  QLLYKDV

XP_022991475.1 thioredoxin-like protein 4B [Cucurbita maxima]4.9e-5397.2Show/hide
Query:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
        LAKCAREVSKFASIALVDIDSEE+QVY+KYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFH+KQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
Subjt:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY

Query:  QLLYKDV
        QLLYKDV
Subjt:  QLLYKDV

XP_038899401.1 thioredoxin-like protein 4B [Benincasa hispida]8.3e-5397.2Show/hide
Query:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
        LAKCAREVSKFASIALVDIDSEE+Q+YVKYFDITLIPSTVFFFNAHHMKMDSGT DHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
Subjt:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY

Query:  QLLYKDV
        QLLYKDV
Subjt:  QLLYKDV

TrEMBL top hitse value%identityAlignment
A0A1S3BH38 thioredoxin-like protein 4B4.4e-5295.33Show/hide
Query:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
        LAKCAREVSKFASIALVDIDSEE+QVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKW+GAFHQKQ+FIDVVEAIFRGAMKGKLIVNCPLPPE+IPKY
Subjt:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY

Query:  QLLYKDV
        QLL+KDV
Subjt:  QLLYKDV

A0A6J1DGN8 thioredoxin-like protein 4B4.0e-5397.2Show/hide
Query:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
        LAKCAREVSKFASIALVDIDSEEIQVY+KYFDI+LIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
Subjt:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY

Query:  QLLYKDV
        QLLYKD+
Subjt:  QLLYKDV

A0A6J1GQC5 thioredoxin-like protein 4B5.2e-5397.2Show/hide
Query:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
        LAKCAREVSKFASIALVDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFH+KQDFIDVVEAIFRGAMKGKLIV+CPLPPERIPKY
Subjt:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY

Query:  QLLYKDV
        QLLYKDV
Subjt:  QLLYKDV

A0A6J1JT18 thioredoxin-like protein 4B2.4e-5397.2Show/hide
Query:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
        LAKCAREVSKFASIALVDIDSEE+QVY+KYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFH+KQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
Subjt:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY

Query:  QLLYKDV
        QLLYKDV
Subjt:  QLLYKDV

A0A6P5WN39 thioredoxin-like protein 4B2.2e-5192.52Show/hide
Query:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
        LAK AREVSKFA++ALVD+DSE++QVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKW+GAFH+KQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
Subjt:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY

Query:  QLLYKDV
        QLLYKDV
Subjt:  QLLYKDV

SwissProt top hitse value%identityAlignment
P87215 Mitosis protein dim11.7e-0838.46Show/hide
Query:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP
        L + A +V   A I LVDID  E+  + K +++    + +FF+   HM +D GT ++ K       KQ+ ID++E IFRGA KGK +V  P
Subjt:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP

Q553S5 Thioredoxin-like protein 4A homolog2.2e-0835.24Show/hide
Query:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
        LA  A +V   A I +VDI   E+      +++     T+FF+   H+ +D GT ++ K   A   KQD ID++E +++GA KGK +VN   P +  P+Y
Subjt:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY

Query:  QLLYK
        + L K
Subjt:  QLLYK

Q8BUH1 Thioredoxin-like protein 4B3.2e-3157.94Show/hide
Query:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
        L+K + ++SK A+I LVD+D     VY +YFDI+ IPSTVFFFN  HMK+D G+ DHTK++G+F  KQDFID++E I+RGAM+GKLIV  P+ P+ +PKY
Subjt:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY

Query:  QLLYKDV
         LLY+D+
Subjt:  QLLYKDV

Q9FE62 Thioredoxin-like protein YLS87.6e-0939.78Show/hide
Query:  LAKCAREVSKFASIALVDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP
        LA  A  +  FA I LVDI +  +     + +D    PSTV FFF   H+ +D GT ++ K   A   KQ+FID++E ++RGA KG+ +V  P
Subjt:  LAKCAREVSKFASIALVDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP

Q9NX01 Thioredoxin-like protein 4B1.4e-3158.88Show/hide
Query:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
        L+K + ++SK A+I LVD+D  +  VY +YFDI+ IPSTVFFFN  HMK+D G+ DHTK++G+F  KQDFID++E I+RGAM+GKLIV  P+ P+ IPKY
Subjt:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY

Query:  QLLYKDV
         LLY+D+
Subjt:  QLLYKDV

Arabidopsis top hitse value%identityAlignment
AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP8.3e-5183.18Show/hide
Query:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY
        LAK  R+VSKFA +ALVD+DSE++QVYVKYFDITL PST+FFFNAHHMK+DSGTADHTKW+GAFH KQDFIDVVEAI+RGAMKGK+IV CP+PPERIPKY
Subjt:  LAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKY

Query:  QLLYKDV
        QL+YKDV
Subjt:  QLLYKDV

AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP5.4e-1039.78Show/hide
Query:  LAKCAREVSKFASIALVDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP
        LA  A  +  FA I LVDI +  +     + +D    PSTV FFF   H+ +D GT ++ K   A   KQ+FID++E ++RGA KG+ +V  P
Subjt:  LAKCAREVSKFASIALVDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGTTCTGTCCTAGGTTTTCTATGGGCAAACCGACAGTGTAACTCGACTGCTTATGTTTTAGCTTTCCATGCCTGCATAGGGGCAAATTTGTTGGGACGTTCAGC
TTGCTTTCCAAGGGGCAAGGGGAGTTCGGCGGTCTCCCTCCTCGACACTACCAGCAAACTCCGGTGGCGGTGGCGCTTCACATTAAGGCTTGCTAAGTGCGCACGAGAAG
TATCGAAGTTTGCTTCAATAGCACTGGTTGATATTGATTCAGAAGAAATACAGGTTTACGTTAAGTACTTTGACATTACTCTTATACCATCCACTGTTTTCTTCTTCAAT
GCTCATCATATGAAGATGGATTCAGGGACTGCGGATCATACAAAGTGGATTGGTGCTTTTCACCAAAAGCAGGATTTTATTGATGTTGTGGAGGCAATATTTAGGGGAGC
AATGAAAGGCAAGCTCATTGTGAATTGTCCGTTGCCTCCTGAGCGAATTCCAAAATACCAGTTATTATACAAGGATGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTGGTTCTGTCCTAGGTTTTCTATGGGCAAACCGACAGTGTAACTCGACTGCTTATGTTTTAGCTTTCCATGCCTGCATAGGGGCAAATTTGTTGGGACGTTCAGC
TTGCTTTCCAAGGGGCAAGGGGAGTTCGGCGGTCTCCCTCCTCGACACTACCAGCAAACTCCGGTGGCGGTGGCGCTTCACATTAAGGCTTGCTAAGTGCGCACGAGAAG
TATCGAAGTTTGCTTCAATAGCACTGGTTGATATTGATTCAGAAGAAATACAGGTTTACGTTAAGTACTTTGACATTACTCTTATACCATCCACTGTTTTCTTCTTCAAT
GCTCATCATATGAAGATGGATTCAGGGACTGCGGATCATACAAAGTGGATTGGTGCTTTTCACCAAAAGCAGGATTTTATTGATGTTGTGGAGGCAATATTTAGGGGAGC
AATGAAAGGCAAGCTCATTGTGAATTGTCCGTTGCCTCCTGAGCGAATTCCAAAATACCAGTTATTATACAAGGATGTGTAG
Protein sequenceShow/hide protein sequence
MSGSVLGFLWANRQCNSTAYVLAFHACIGANLLGRSACFPRGKGSSAVSLLDTTSKLRWRWRFTLRLAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFN
AHHMKMDSGTADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV